Back to GetFilings.com



Table of Contents



UNITED STATES SECURITIES AND EXCHANGE COMMISSION
Washington D.C. 20549
 
Form 10-K
     
(Mark One)
   
þ
  ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d)
OF THE SECURITIES EXCHANGE ACT OF 1934
 
    For the fiscal year ended December 31, 2004
 
or
 
o
  TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d)
OF THE SECURITIES EXCHANGE ACT OF 1934
 
    For the transition period from           to          .
Commission File Number: 0-28402
 
Aradigm Corporation
(Exact Name of Registrant as Specified in Its Charter)
     
California
  94-3133088
(State or Other Jurisdiction of
Incorporation or Organization)
  (I.R.S. Employer
Identification No.)
3929 Point Eden Way, Hayward, CA 94545
(Address of Principal Executive Offices)
Registrant’s telephone number, including area code:
(510) 265-9000
Securities registered pursuant to Section 12(b) of the Act:
None
Securities registered pursuant to Section 12(g) of the Act:
Common Stock, no par value
 
      Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.     Yes þ          No o
      Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K is not contained herein and will not be contained, to the best of registrant’s knowledge, in definitive proxy or information statements incorporated by reference in Part III of this Form 10-K or any amendment to this Form 10-K.     Yes o          No þ
      Indicate by check mark whether the registrant is an accelerated filer (as defined in Rule 12b-2 of the Act)     Yes o          No þ
      Aggregate market value of registrant’s common stock held by non-affiliates of the registrant, based upon the closing price of a share of the registrant’s common stock on June 30, 2004: $45,712,582.
      Number of shares of the registrant’s common stock outstanding as of February 28, 2005: 72,297,980.
DOCUMENTS INCORPORATED BY REFERENCE
      (1) Items 10, 11, 12, 13 and 14 of Part III incorporate information by reference from the Registrant’s definitive proxy statement for the Annual Meeting of Shareholders to be held on May 19, 2005.




TABLE OF CONTENTS
             
        Page
         
 PART I
   Business     1  
   Properties     18  
   Legal Proceedings     18  
   Submission of Matters to a Vote of Security Holders     18  
 
 PART II
   Market for the Registrant’s Common Stock and Related Stockholder Matters     19  
   Selected Financial Data     21  
   Management’s Discussion and Analysis of Financial Condition and Results of Operations     22  
   Risk Factors     29  
   Quantitative and Qualitative Disclosure About Market Risk     38  
   Financial Statements and Supplementary Data     39  
   Changes in and Disagreements with Accountants on Accounting and Financial Disclosure     63  
   Controls and Procedures     63  
   Other Information     63  
 
 PART III
   Directors and Executive Officers of the Registrant     64  
   Executive Compensation     64  
   Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters     64  
   Certain Relationships and Related Transactions     64  
   Principal Accountant Fees and Services     64  
 
 PART IV
   Exhibits, Financial Statements Schedules, and Reports on Form 8-K     65  
 SIGNATURES     68  
 EXHIBIT 23.1
 EXHIBIT 31.1
 EXHIBIT 31.2
 EXHIBIT 32.1


Table of Contents

      This Annual Report on Form 10-K contains forward-looking statements, including, without limitation, statements regarding timing and results of clinical trials, the timing of regulatory approvals, the establishment of corporate partnering arrangements, the anticipated commercial introduction of our products and the timing of our cash requirements. These forward-looking statements involve certain risks and uncertainties that could cause actual results to differ materially from those in such forward-looking statements. Potential risks and uncertainties include, without limitation, those mentioned in this Report and, in particular, the factors described below in Part II under the heading “Risk Factors”.
PART I
Item 1. Business
Overview
      Aradigm Corporation is a leading developer of innovative needle-free drug delivery systems that enable patients to self-administer liquid drugs that would otherwise be given by injection. Our hand-held AERx technology is designed for the rapid and reproducible delivery of a wide range of pharmaceutical drugs and biotech compounds through the lung. Our pen-sized, needle-free subcutaneous Intraject system is designed to comfortably and rapidly deliver drugs to the subcutaneous layer of the skin, where it can gain access to the bloodstream. We believe that our non-invasive AERx and Intraject systems, which have been shown in clinical studies to achieve performance equivalent to injection, will be welcome alternatives to injection-based drug delivery. In addition, both of our systems may improve therapeutic efficacy in cases where other existing drug delivery methods, such as pills, transdermal patches or inhalers, are too slow or imprecise.
      According to Frost and Sullivan, recognized as a global leader in growth consulting, the United States market for biopharmaceuticals is estimated to grow to $40 billion by year-end 2005 with the majority of biopharmaceutical therapies requiring parenteral administration (injection). We believe that many of these molecules could potentially be delivered using the AERx and Intraject platforms.
      During 2004, our company achieved several clinical and strategic milestones related to each of technology platforms. They included:
  •  Entering into a restructuring of the license agreement for the AERx insulin Diabetes Management System between Aradigm and Novo Nordisk. The restructuring allows for the sale of assets from Aradigm to Novo Nordisk and shifts responsibility to Novo Nordisk for further development and commercialization of the product. We continue to be entitled to royalties on future sales of the commercialized product.
 
  •  Verifying the final design of our Intraject needle-free system, demonstrating that the system met commercially acceptable parameters and that previous issues encountered prior to the technology’s acquisition have been addressed.
 
  •  Receiving positive clinical results from a pilot pharmacokinetic study (measurement of drug level in the blood) of the Intraject system administering sumatriptan as a potential treatment for migraines, showing bioequivalence to the currently marketed injectable product.
 
  •  Executing a development and licensing agreement with Defense R&D Canada for the development of liposomal ciprofloxacin for the treatment of respiratory infections including biological terrorism-related inhalation anthrax.
Needle-Free Drug Delivery Background
      Today an increasing number of drugs, including nearly all biotech drugs, are delivered by injection. While injections are quick and efficient, they have inherent limitations, including inconvenience, discomfort and risk of infection. These limitations have prompted drug manufacturers to explore alternatives such as improved oral delivery formulations, transdermal technologies, needle-free systems and pulmonary delivery systems. We believe that the non-invasive, patient-friendly attributes of our AERx and Intraject platforms address these limitations.

1


Table of Contents

Pulmonary Delivery
      Due to the natural ability of the lung to transfer molecules into the bloodstream, pulmonary drug delivery systems are now being pursued as an alternative to injection. Pulmonary delivery systems were originally developed to treat lung diseases by depositing aerosolized (fine particles or mists) medication in the large airways of the lung. These aerosols were created in medical devices, such as nebulizers, metered-dose inhalers and dry powder inhalers, for inhalation by the patient. While these systems have been useful in the treatment of diseases such as asthma, they generate a wide range of particle sizes, only a portion of which can reach the targeted lung tissues and which rely heavily on proper patient breathing technique to ensure appropriate delivery.
      Considerable recent research has been devoted to developing a means to create well-defined small-particle aerosols suitable for efficient pulmonary delivery of drugs, either to treat lung diseases or for absorption into the bloodstream for systemic effect. To deliver pharmaceuticals to or through the lungs, drugs must be transformed into an aerosol that can be inhaled by the patient. In order for aerosols to be delivered to the deep lung, the individual particles must be small (three microns or less in diameter) and the velocity of these particles must be low as they pass through the upper airways and into the deep lung. The particle velocity is largely determined by how fast the patient is inhaling. Large or fast-moving particles typically get deposited in the mouth or upper airways, where they cannot be absorbed and may not be effective. Recent advances in dry-powder formulation technology have made possible the creation of smaller particle aerosols suitable for more efficient deep-lung delivery and several companies are developing systems based on this approach. However, most drugs being considered for pulmonary delivery are currently marketed in stable liquid formulations. We believe the extra steps involved in making dry powder formulations of these drugs will make them more difficult and costly to produce than liquid-based formulations. In addition, today’s dry-powder delivery systems under development continue to rely on individual patient breathing technique for the actual drug delivery. It is well documented that the typical patient frequently strays from proper inhalation technique and may not be able to maintain a consistent approach over even moderate periods of time after training. Since precise and reproducible dosing with medications is necessary to ensure safety or therapeutic efficacy, any variability in breathing technique among patients or from dose to dose may negatively impact the effectiveness of the drugs.
Subcutaneous Delivery
      While the concept of subcutaneous, needle-free drug delivery has been around for several decades, early systems were powered by large, complex and expensive air compressors and therefore usually reserved for vaccine applications. Only recently have research and advances in technology produced smaller, more patient-friendly configurations and made subcutaneous, needle-free delivery an attractive and viable option. Data from clinical trials conducted using the Intraject system indicate that the needle-free delivery of drugs to the subcutaneous region of the skin allows for a speed of absorption into the bloodstream equivalent to subcutaneous needle injections. We believe that effective and convenient needle-free delivery could improve patient compliance with prescribed therapy compared with the same therapy delivered with needle injections.
The Aradigm Solution for Pulmonary Delivery
AERx
      Our AERx technology platform is being developed to enable pulmonary delivery of a wide range of pharmaceuticals in liquid formulations for local or systemic effect. Our proprietary AERx technologies focus principally on delivering liquid medications through small-particle aerosol generation and controlling patient-inhalation technique for efficient and reproducible delivery of the aerosol drug to the deep lung. We have developed these proprietary technologies through an integrated approach that combines expertise in physics,

2


Table of Contents

electrical engineering, mechanical engineering, laser engineering and pharmaceutical sciences. The key features of the AERx platform include:
Ease of Drug Formulation
      The AERx platform takes advantage of existing liquid-drug formulations, reducing the time, cost and risk of formulation development compared to dry-powder-based technologies. The formulation technology of the AERx platform allows us to use conventional, sterile pharmaceutical manufacturing techniques. We believe that this approach will result in lower cost production methods than those used in dry powder systems because we are able to bypass entirely the complex formulation processes required for those systems. Moreover, the liquid drug formulations used in AERx systems are expected to have the same stability profile as the currently marketed versions of the same drugs. Because of the nature of liquid formulations, the excipients we use are standard and therefore minimize safety concerns.
Efficient, Precise Aerosol Generation
      Our proprietary technology produces the low-velocity, small-particle aerosols necessary for efficient deposition of a drug in the deep lung. Liquid-drug formulations are aerosolized from pre-packaged, single-use, disposable packets using the hand-held AERx device. Each disposable packet is comprised of a small blister package of the drug, which is adjacent to an aerosolization nozzle. The AERx device compresses the packet to push the drug through the nozzle and thereby creates the aerosol. No propellants are required since mechanical pressure is used to generate the aerosol. Each packet is used only once to avoid plugging or wearing that would degenerate aerosol quality if reused. Through this technology, we believe we can achieve highly efficient and reproducible aerosols. The AERx device also has the ability to deliver a range of patient selected doses, making it ideal for applications where the dose can change between uses or over time.
Automated Breath-Controlled Delivery
      Studies have shown that even well trained patients tend to develop improper inhalation technique over time, resulting in less effective therapy. The AERx electronic platform employs a patented technology to measure the patient’s inhalation flow rate through the mouthpiece of the hand-held device. Indicator lights on the device guide the patient to inhale slowly and evenly for optimal drug delivery. When the desired flow-rate is established early in the breath, drug delivery is automatically initiated. As a result, a consistent dose of medication is delivered each time the product is used. The flow-rate can be adjusted for different patient needs; for example, a low-flow device has been developed for use by cystic fibrosis patients. Novel flow-rate controls have also been developed for Aradigm’s AERx Essence, a second-generation all-mechanical delivery device designed for topical lung delivery and systematic delivery of small molecules.
The Aradigm Solution for Needle-Free Subcutaneous Delivery
Intraject
      Intraject, a pen-sized, pre-filled, single-use, system, is designed to enable patients or healthcare workers to deliver precise measured doses of drug to the subcutaneous layer of the skin without the use of needles. This system has two main parts: the glass drug capsule with a fill volume of 0.5 ml and a compact nitrogen gas power source called the actuator. Intraject uses the actuator to create a high-velocity, fine liquid stream that penetrates the skin to pass into the subcutaneous layer.
      The Intraject system uses a pre-filled, fixed dose, a feature that is ideal for those applications where the dose does not change over the short term.
      Ease-of-use is a key benefit of the Intraject system. The patient or healthcare worker first snaps the cap off of the system, flips the safety lever, and then presses the Intraject directly to the skin, thereby activating the system. The injection itself is completed in less than 60 milliseconds.
      We are developing this system to allow for the subcutaneous needle-free delivery of a wide range of pharmaceuticals and biopharmaceuticals. In clinical trials, patients have preferred Intraject to the standard

3


Table of Contents

needle and syringe. We are implementing a Contract Manufacturing Organization (CMO) strategy for manufacture of the Intraject system. This approach will use best-in-class suppliers from around the world whose expertise will allow us to minimize risk and costs normally incurred if we were to assume responsibility ourselves. We have secured supplier agreements with each of these manufacturers, many of who worked on this program prior to its acquisition by Aradigm. We are now in a position to execute on this strategy with production of lots for our pivotal bioequivalence studies for our first drug in 2005.
      Key features of the Intraject platform include:
  •  Pre-filled and ready to use;
 
  •  Lightweight and pocket-sized; and
 
  •  Easy to operate.
      Intraject’s clinical and regulatory development timelines may be more abbreviated. In the case of drugs that are already approved for subcutaneous injection, bioequivalence studies are pivotal in obtaining marketing approval. These studies and trials could be conducted in as little as a few months. We believe that this is another attractive feature to potential partners as they address issues such as patent expiration and life cycle management relating to their marketed products.
Strategy
      Our goal is to become the leader in the development and commercialization of needle-free drug delivery products. Our strategy incorporates the following principal elements:
Establish Broad Applicability of our Platforms
      We believe the AERx and Intraject platforms will be broadly applicable to drugs intended for either local delivery to the lung or systemic delivery. In addition to our publicly announced late-stage program with AERx in diabetes, potential applications for the AERx and Intraject platforms include delivery of therapies in the areas of cardiovascular, neurological and respiratory diseases; oncology; endocrine disorders; infections and inflammatory conditions.
      This strategy, we believe, will maximize the number of commercial product opportunities for us and will increase the interest of potential partners in developing drugs for the AERx and Intraject platforms.
Expand Existing and Develop New Collaborative Relationships
      In order to enhance our commercial opportunities and effectively leverage our core scientific resources, our strategy is to enter into multiple collaborative relationships with pharmaceutical and biotech companies for the development and commercialization of new products utilizing our technologies. In 2004 we saw an increased interest in our technology platforms that resulted in initiation of several early-stage feasibility studies. Through product development collaborations, we seek access to proprietary pharmaceutical compounds as well as to the resources necessary to conduct late-stage clinical programs and obtain regulatory approvals. In addition, we will continue pursuing relationships with companies with established sales forces and distribution channels in our target markets. By establishing such collaborative relationships, we intend to introduce multiple new products while avoiding the need to establish drug discovery research and sales and marketing capabilities.
Enhance Our Strong Proprietary Position
      We believe that establishing a strong proprietary position in pulmonary and needle-free drug delivery is important in order for us to be competitive in our target markets. We have aggressively pursued comprehensive patent protection of our technology and, as of February 28, 2005, we have over 248 issued United States and foreign patents and 107 pending worldwide applications. While there can be no assurance that any of our patents will provide a significant commercial advantage, these patents are intended to provide protection for

4


Table of Contents

important aspects of our technologies and maintenance of trade secrets associated with key elements of our manufacturing technologies.
Maintain Technological Leadership
      We are making a substantial research and development investment to establish and maintain technological leadership in pulmonary and needle-free drug delivery. This includes research and development programs to design future generations of our pulmonary and needle-free delivery systems. The goal of these programs is to access a wider range of markets, broaden our technology base, achieve manufacturing efficiencies and develop next-generation delivery devices. We have invested in efforts to accelerate development on the Intraject program by creating an in-vitro/in-vivo correlation model to predict the clinical performance of compounds we are testing. We are supported by our Scientific Advisory Board, whose members are leaders in drug delivery and clinical specialties of key interest to Aradigm.
Aradigm Product Applications
      AERx and Intraject are both positioned to address multiple therapeutic disease areas. We are developing the hand-held AERx platform based on a comprehensive approach to pulmonary drug delivery that includes drug formulation, aerosol generation, patient breath control and compliance monitoring technologies. We are currently developing AERx products for applications in respiratory diseases such as asthma and Chronic Obstructive Pulmonary Disease (COPD) as well as, conducting investigations in cardiovascular disease, endocrine disorder, oncology, infections, neurological disease, and inflammatory conditions. In addition, we are planning to develop AERx systems for the non-invasive delivery of certain other drugs, including proteins, peptides, gene vectors and small molecules.
      Our Intraject platform is in late-stage development. Recently we completed two key clinical studies examining performance as well as clinical bioequivalence. Completed in October, our Clinical Performance Verification Trials demonstrated that the design of the current system met commercially viable parameters and that all previous performance issues related to the system prior to its acquisition have been addressed. Following this trial we initiated a pilot pharmacokinetic study with sumatriptan, a marketed treatment for migraine headaches, designed to compare Intraject against the currently marketed injectable product. Results showed that the Intraject system met all bioequivalence criteria and demonstrated statistically equivalent pharmacokinetics to the injectable product. We are planning to develop Intraject systems for the delivery of certain monoclonal antibodies, proteins, peptides and high viscosity drugs.
AERx insulin Diabetes Management System
      The AERx insulin Diabetes Management System permits patients with diabetes to non-invasively self-administer insulin. We believe that when patients are provided a non-invasive delivery alternative to injection, they will be more likely to self-administer insulin as often as needed to keep tight control of their blood-glucose levels. This product is being developed in collaboration with Novo Nordisk A/S, a leader in the field of diabetes care. In January 2005 we completed the restructuring of the AERx insulin Diabetes Management System program, pursuant to the Restructuring Agreement entered into with Novo Nordisk A/S and Novo Nordisk Delivery Technologies in September 2004. Under our current agreements with Novo Nordisk, Novo Nordisk has assumed responsibility of the completion of development, manufacturing and commercialization of the AERx insulin product. We will be entitled to royalties on future sales of the commercialized product.
The Market
      Unregulated glucose levels in diabetes patients are associated with short and long-term effects, including blindness, kidney disease, heart disease, amputation resulting from chronic or extended periods of reduced blood circulation to body tissue and other circulatory disorders. Patients with Type 1 diabetes do not have the ability to produce their own insulin and must take insulin from an external source to survive. To avoid developing the long-term complications of the disease they must also self-inject insulin regularly throughout the day to simulate the natural pancreatic production of insulin in response to meals. Patients with Type 2

5


Table of Contents

diabetes are unable to efficiently use the insulin that their bodies produce, but they do not initially need external insulin to survive. However, patients with Type 2 diabetes have the same requirement to control their blood glucose levels to avoid the long-term complications of the disease. While many patients can initially maintain control with oral medications, Type 2 diabetes is a progressive disease in which the ability to use and make insulin gradually declines. Eventually, most patients with Type 2 diabetes will require external insulin to maintain their health and avoid the long-term complications associated with diabetes.
      The Diabetes Control and Complications Trial (DCCT) of patients with Type 1 diabetes sponsored by National Institutes of Health indicated that insulin doses should be adjusted throughout the day in response to frequently measured blood glucose levels. The DCCT showed that keeping blood glucose levels as close to normal as possible slows complications caused by diabetes. In fact, the DCCT demonstrated that any sustained lowering of blood-glucose levels is beneficial, even if the person has a history of poor blood-glucose control. Separately, the United Kingdom Prospective Diabetes Study has also demonstrated that tighter blood-glucose control can provide essentially the same benefits for patients with Type 2 diabetes.
      According to 2002 statistics from the American Diabetes Association, approximately 18.2 million Americans suffer from either Type 1 or Type 2 diabetes. Approximately 90-95% of these Americans have Type 2 diabetes, and the prevalence of Type 2 diabetes has increased dramatically over the past decade due to lifestyle factors such as poor diet and inactivity. Type 2 patients consume the majority of insulin used in the United States due to their larger numbers and larger insulin doses. However, given the less acute nature of Type 2 diabetes, many of these patients are reluctant to take insulin by injection. Through our convenient, non-invasive AERx insulin Diabetes Management System, we believe we can address this patient reluctance, reduce overall treatment costs and grow the total worldwide insulin market beyond its currently accepted levels. The leading suppliers of insulin worldwide are Novo Nordisk A/ S and Eli Lilly.
The Product
      Patients with diabetes often avoid or limit the amount of insulin therapy because of the pain and inconvenience of administering the drug by injection. The AERx insulin Diabetes Management System is being designed as a painless and convenient alternative to drug injection. This will enable patients with diabetes to comply more effectively with their insulin therapy, thereby lessening the risk of long-term complications. We also believe that the features of the AERx insulin Diabetes Management System will allow people with diabetes to achieve more consistent and precise control over their blood-glucose levels. A clinical study we conducted in healthy, fasting volunteers has shown that the way an individual breathes during drug delivery has a significant effect on the pharmacokinetic profile of the delivered insulin. The proprietary breath-control technology incorporated in the AERx insulin Diabetes Management System may eliminate this potential variability as a factor in the pulmonary delivery of insulin.
      Standard insulin therapies presently require that doses of insulin given by injection be adjusted in increments of one international unit, which is a standard unit of measure for insulin. We are not aware of any competitive products under development that are being designed to provide the same one unit dosing adjustability as the AERx insulin Diabetes Management System. We believe that our AERx insulin Diabetes Management System can provide a non-invasive method for delivery of insulin that would be very efficient and easily reproduced.
Clinical Development
      In November 2001, we successfully completed Phase 2b clinical trials for our AERx insulin Diabetes Management System, which showed that the product might be successfully used to treat Type 2 diabetes patients with insulin delivered via the pulmonary route. The Phase 2 trial was designed to investigate the safety and efficacy of pulmonary insulin via the AERx insulin Diabetes Management System compared to intensified treatment with insulin injections in patients with Type 2 diabetes. Approximately 100 patients were included for a 12-week period in the study. The results of the study, announced in June 2002 at the Annual Meeting of the American Diabetes Association in San Francisco, California, showed the safety and efficacy of the AERx insulin Diabetes Management System to be comparable to an intensive subcutaneous injection regimen of insulin.

6


Table of Contents

      During the third quarter of 2002, we initiated the first study in our Phase 3 clinical program, a two-year study in Type 1 diabetics examining the long-term safety and efficacy of inhaled insulin. This study compared regular human insulin administered via the AERx system to rapid acting insulin administered subcutaneously. In April 2004, Aradigm and Novo Nordisk announced results from a planned 1-year interim analysis of this study. This planned interim analysis, designed to examine safety and efficacy of the trial, showed that the primary efficacy endpoints in achieving HbA1c levels were being met. However, a secondary efficacy endpoint of post-meal blood glucose control was found not to be equivalent between regular human insulin delivered via the AERx system to rapid acting insulin administered subcutaneously. Novo Nordisk also examined the safety portion of the study. Results showed that the trial had achieved all of the safety endpoints including favorable lung function tests and clear chest x-rays. To investigate the results pertaining to the secondary efficacy endpoints, Novo Nordisk initiated a pharmacokinetic/pharmacodynamic study in these Type 1 patients. Novo Nordisk has indicated that it will evaluate the results of this trial in its planning for additional trials.
Collaboration
      In June 1998, we entered into a product development and commercialization agreement with Novo Nordisk A/S, the world leader in diabetes care, covering the use of the AERx insulin Diabetes Management System for the delivery of blood-glucose regulating medicines.
      From the inception of our collaboration in June 1998 through December 31, 2004, we have received from Novo Nordisk A/S approximately $141.1 million in product development payments, approximately $13.0 million in milestone payments and $35.0 million from the purchase of our common stock by Novo Nordisk A/S and its affiliates. As of January 26, 2005, we completed the restructuring of our AERx iDMS program, pursuant to the Restructuring Agreement entered into with Novo Nordisk A/S and Novo Nordisk Delivery Technologies, Inc., (“NNDT”) a newly created wholly owned subsidiary of Novo Nordisk. Under the terms of the Restructuring Agreement we sold certain equipment, leasehold improvements and other tangible assets currently utilized in the AERx iDMS program to Novo Nordisk Delivery Technologies, for a cash payment of approximately $55.3 million in which we received net proceeds of $51.3 million after refund of cost advances of approximately $4.0 million made by Novo Nordisk. In addition, Novo Nordisk Delivery Technologies hired 126 Aradigm employees at the closing of the restructuring transaction. Our expenses related to this transaction for legal and other consulting costs were approximately $1.1 million. In connection with the restructuring transaction, we entered into various related agreements with Novo Nordisk and Novo Nordisk Delivery Technologies, effective January 26, 2005, including the following:
  •  an amended and restated license agreement amending the Development and License Agreement previously in place with Novo Nordisk, expanding Novo Nordisk’s development and manufacturing rights to the AERx iDMS program and providing for royalties to us on future AERx iDMS net sales and
 
  •  a three-year agreement under which Novo Nordisk Delivery Technologies will perform contract manufacturing for us of AERx iDMS-identical devices and dosage forms filled with compounds provided by us in support of preclinical and initial clinical development by us of other AERx products.
      As of September 28, 2004 Novo Nordisk beneficially owned 7,868,369 shares of our common stock, representing approximately 10% of our total common stock on an as converted basis at December 31, 2004.
Intraject/Sumatriptan Needle-Free Subcutaneous Delivery System
      Our most advanced Intraject System is being developed to deliver sumatriptan, which is being developed as a needle-free alternative for migraine sufferers. As our clinical data to date indicate a clear preference by patients for the Intraject system over the currently available needle-based therapy, we believe that this application could offer significant benefits over currently marketed products. We believe that the easy-to-use, patient friendly approach will assist patients in managing their migraines. In November 2004, we announced clinical results from a pilot pharmacokinetic study demonstrating that Intraject was bioequivalent to the currently injectable product. We intend to continue this application as a self-initiated study with the goal of

7


Table of Contents

partnering the program for commercialization. There can be no assurance that this development program will be successful.
The Market
      A migraine is a primary neurological disorder in which episodes can last from between four and 72 hours. According to healthcare market research leader Datamonitor, migraines effect roughly 11% of the adult population, or about 74 million people, in seven major markets. It is estimated that the average migraine sufferer experiences up to 12 attacks per year, with most attacks being categorized as severe to very severe. Sumatriptan is a member of the triptan family of serotonin agonists and was the first triptan to be launched in 1992 and continues to be a top seller. Triptans have been shown to treat both the pain and the symptoms, such as nausea, vomiting, phonophobia, and photophobia associated with migraines. Clinical data has shown that subcutaneous delivery of sumatriptan offers the most rapid pain relief of all the triptans, with onset of action occurring in as little as 10-15 minutes following administration. Sumatriptan is currently marketed under the trade name Imitrex in oral, nasal and injectable forms and the injectable form is covered by a series of patents the first of which is scheduled to come off patent in 2006 in Europe and 2007 in the United States. There is an additional U.S. Patent relating to sumatriptan that does not expire until 2009, though this patent has been challenged by multiple parties and may be ruled invalid. There can be no assurance that this patent will be invalidated, and if not, under certain circumstances we will be unable to enter the U.S. market with Intraject sumatriptan until 2009.
The Product
      Patients indicate that the most important attributes to migraine therapy are high efficacy and rapid pain relief. The Intraject-Sumatriptan system is being designed to address many of the issues affecting injection of sumatriptan including ease of use and needle-phobia. We believe Intraject will be the first pre-filled, needle-free configuration on the market. We believe that Intraject’s ease of self-administration will translate into better treatment options for patients. In addition, the ability for a patient to self-administer will eliminate the need for office visits while promoting compliance and a more immediate alternative to traditional injectable sumatriptan.
      Although injectable sumatriptan is considered the leading treatment with a rapid and sustainable onset of pain relief, needles are not popular with patients. And while oral tablets offer ease-of-use, this route is often not the best approach due to the nausea that accompanies the migraine and the slower onset of relief. We believe that migraine sufferer will recognize the benefit of combining a patient-friendly, needle-free approach with the efficacy profile of the leading injectable migraine therapy.
Clinical Development
      Prior to our acquisition of the Intraject technology from Weston Medical, Weston had conducted 12 clinical and preclinical studies with Intraject to examine bioequivalence with several drugs, verify design configuration and compare patient preference with traditional injection methods. Following the disclosure of disappointing results due to unreliable product performance; Weston was forced to discontinue development of the Intraject product. Subsequently, we acquired the Intraject assets in May 2003. We redesigned the Intraject system, and in October 2004, we announced positive results from the Clinical Performance Verification (CPV) trial in which the final design of the system demonstrated an excellent delivery profile. Results showed that the corrected system demonstrated successful injection performance reliability and that the current design presented commercially viable delivery parameters.
      Following the results from the CPV trial, we initiated a pilot pharmacokinetic study comparing Intraject with sumatriptan to the currently marketed needle-injected product. The trial was a randomized, open-label, single-dose, crossover study evaluating the pharmacokinetics of sumatriptan at three injection sites (abdomen, thigh, and arm) in 18 healthy adult male and female volunteers.
      In November 2004, we announced positive results from this study, showing that sumatriptan delivered by Intraject met all bioequivalence criteria and demonstrated statistically equivalent pharmacokinetics to the

8


Table of Contents

marketed injectable product. Specifically, the comparability of Intraject to the subcutaneous needle-injected sumatriptan product was established at all three injection sites using standard bioequivalence criteria of peak concentration achieved in blood plasma (Cmax) and total drug concentration in blood plasma achieved over time (AUC).
      Based on this positive data, we plan to manufacture clinical lots for pivotal bioequivalence studies to be initiated in 2005. With our current development timeline, we anticipate commercial launch of the product in 2007. It is our intent to progress with clinical development while concurrently identifying a marketing partner to commercialize this product.
Manufacturing/Commercialization Strategy
      We are implementing a CMO strategy for production of the Intraject system. This approach will use best-in-class suppliers from around the world whose expertise will allow us to minimize risk and costs normally incurred if we were to assume responsibility ourselves. We have secured agreements with several of these manufacturers, many of which have worked on this program prior to its acquisition by Aradigm. In 2004 we continued to develop the Intraject product and the CMO structure. We expect to execute on this strategy for production of lots for our pivotal bioequivalence studies in 2005.
Additional Potential Applications — AERx and Intraject
      The AERx and Intraject systems have applicability for a range of compounds developed by pharmaceutical and biotechnology companies, including many compounds that cannot be delivered orally. Due to their large size and poor oral bioavailability, large molecules developed by the biotechnology industry are typically developed in liquid formulations and delivered by injection. We believe that the AERx platform could provide for improved delivery and increased utilization of many of these therapies. In addition, clinical trials of our Intraject system have demonstrated the opportunity and ability of this technology to deliver small molecules as well as monoclonal antibodies.
      Based on our clinical trials to date, we believe that Aradigm has greater experience in human clinical trials than any other company in the advanced pulmonary-drug delivery market. In addition, we believe that the breadth of our human testing, which has encompassed both small molecules and large molecules for both local lung delivery and systemic delivery, is one of the more comprehensive ever conducted in pulmonary drug delivery. In addition, we have performed proactive targeting evaluations of molecules in development to determine their suitability for delivery via the AERx technology. We continue to identify candidates in the following therapeutic areas:
     
Cardiovascular disease
  Endocrine disorder
Oncology
  Infections
Neurological disease
  Respiratory disease
Inflammatory conditions
   
      While we are assessing the feasibility of the AERx system with compounds in various therapeutic areas, Aradigm does not typically disclose information surrounding the specifics of these studies (including the drug or partner involved) until the program moves into a later stage of development or at an earlier time that is mutually agreed upon by Aradigm and the partner.
      We also believe that substantial opportunities exist within multiple disease areas for our Intraject technology. Intraject’s ability to allow for a rapid, comfortable administration in a patient-friendly format well suited for chronically delivered therapies that once needed to be administered by physicians. Initially identified opportunities have been viscous and non-viscous liquid drugs given by injection in the following areas:
     
Neurological disease
  Endocrine disorder
Oncology
  Infections
Inflammatory conditions
  Immunological disorder

9


Table of Contents

Sales and Marketing
      We plan to establish additional collaborative relationships to develop and commercialize our AERx and Intraject products. Through these collaborations, we intend to access resources and expertise to conduct late-stage clinical development and to market and sell AERx and Intraject products. Ideal development partners will generally have both a commercial and a development presence in the target market and will also have a commitment to grow that market via our drug-delivery technology. Where consistent with other objectives, we plan to give preference to development partners whose pipelines contain multiple products whose value could be enhanced by our drug-delivery technologies.
      In some cases, Aradigm’s strategy will be to take a program further in development in order to achieve higher royalties from the commercialization partner.
Manufacturing
      Our clinical strip-manufacturing facility in Hayward, California was completed and validated in July 1998. This facility enables us to produce the disposable nozzles, assemble the disposable unit-dose strips and fill the drug into the unit-dose strips. Current capacity of this facility exceeds 20 million disposable packets per year. In addition, we completed the construction of a new facility at our Hayward, California campus for commercial scale production in 2001.
      As of January 26, 2005, we completed the restructuring of our AERx iDMS program, pursuant to the Restructuring Agreement entered into with Novo Nordisk A/S and Novo Nordisk Delivery Technologies, Inc. Under the terms of the Restructuring Agreement we have transferred our manufacturing facilities to Novo Nordisk Delivery Technologies, and NNDT will perform contract manufacturing services for us of AERx iDMS-identical devices and dosage forms filled with compounds provided by us in support of preclinical and initial clinical development by us of other AERx products.
      We believe that the manufacturing processes for the AERx system are now sufficiently advanced that additional capacity can be replicated using the services of CMO’s. Therefore, we do not intend to build any additional facilities for commercial AERx manufacturing, except at the specific of request and with funding from our marketing partners.
      Our Intraject manufacturing strategy employs a fully integrated third party supply chain, in which several outside suppliers are each responsible for key components, including final assembly. Many of these CMO’s have experience working with Intraject. This approach will allow Aradigm to focus on establishing core competencies in the area of research and development.
      There can be no assurance that we will not encounter unanticipated delays or expenses in establishing high-volume production capacity for AERx devices, AERx disposable drug packets or components related to the Intraject system. Any such delays or expenses could harm our business.
Intellectual Property and Other Proprietary Rights
      Our business and competitive position is dependent upon our ability to protect our proprietary technology and avoid infringing on the proprietary rights of others. We have conducted original research on a number of aspects relating to pulmonary drug delivery. This research has led to novel ideas, which in turn have resulted in 115 United States patents being issued to as of February 28, 2005, with 28 additional United States patent applications pending. In addition, we have purchased three United States patents covering inventions that are relevant to our inhalation technologies. We have 130 issued foreign patents and 79 foreign patent applications pending.
      Our success will depend to a significant extent on our ability to obtain and enforce patents, maintain trade secret protection and operate without infringing on the proprietary rights of third parties. Because the field of aerosolized drug delivery is crowded and a substantial number of patents have been issued and because patent positions can be highly uncertain and frequently involve complex legal and factual questions, the breadth of claims obtained in any application or the enforceability of our patents cannot be predicted. Commercialization

10


Table of Contents

of pharmaceutical products can also be subject to substantial delays as a result of the time required for product development, testing and regulatory approval.
      Our current policy is to file patent applications on what we deem to be important technological developments that might relate to our products or methods of using our products. We also seek to protect some of these inventions through foreign counterpart applications in selected other countries. Statutory differences in patentable subject matter may limit the protection we can obtain on some of our inventions outside of the United States. For example, methods of treating humans are not patentable in many countries outside of the United States. These and other issues may limit the patent protection we will be able to secure outside of the United States.
      The coverage claimed in a patent application can be significantly reduced before a patent is issued, either in the United States or abroad. Consequently, we do not know whether any of our pending or future patent applications will result in the issuance of patents or, to the extent patents have been issued or will be issued, whether these patents will be subjected to further proceedings limiting their scope, will provide significant proprietary protection or competitive advantage, or will be circumvented or invalidated.
      Furthermore, patents already issued to us or our pending applications may become subject to dispute, and any disputes could be resolved against us. For example, Eli Lilly brought an action against us seeking to have one or more employees of Eli Lilly named as co-inventors on some of our patents. This case was determined in our favor in 2004, but there can be no assurance that we will not face other similar claims in the future.
      In addition, because patent applications in the United States and in certain other countries generally are not published until more than 18 months after they are first filed, and because publication of discoveries in scientific or patent literature often lags behind actual discoveries, we cannot be certain that we were the first creator of inventions covered by pending patent applications or that we were the first to file patent applications on such inventions.
      Our policy is to require our officers, employees, consultants and advisors to execute proprietary information and invention and assignment agreements upon commencement of their relationships with us. These agreements provide that all confidential information developed or made known to the individual during the course of the relationship shall be kept confidential except in specified circumstances. These agreements also provide that all inventions developed by the individual on behalf of us shall be assigned to us and that the individual will cooperate with us in connection with securing patent protection on the invention if we wish to pursue such protection. There can be no assurance, however, that these agreements will provide meaningful protection for our inventions, trade secrets or other proprietary information in the event of unauthorized use or disclosure of such information.
      We also execute confidentiality agreements with outside collaborators and consultants. However, disputes may arise as to the ownership of proprietary rights to the extent that outside collaborators or consultants apply technological information developed independently by them or others to our projects, or apply our technology to other projects, and there can be no assurance that any such disputes would be resolved in our favor.
      We may incur substantial costs if we are required to defend ourselves in patent suits brought by third parties. These legal actions could seek damages and seek to enjoin testing, manufacturing and marketing of the accused product or process. In addition to potential liability for significant damages, we could be required to obtain a license to continue to manufacture or market the accused product or process and there would be no assurance that any license required under any such patent would be made available to us on acceptable terms, if at all. Litigation may also be necessary to enforce our patents against others or to protect our know-how or trade secrets. Such litigation could result in substantial expense, and there can be no assurance that any litigation would be resolved in our favor.
Competition
      We are in competition with pharmaceutical, biotechnology and drug delivery companies, hospitals, research organizations, individual scientists and nonprofit organizations engaged in the development of alternative drug delivery systems or new drug research and testing, as well as with entities producing and

11


Table of Contents

developing injectable drugs. We are aware of a number of companies currently seeking to develop new products and non-invasive alternatives to injectable drug delivery, including oral delivery systems, intranasal delivery systems, transdermal systems, buccal, or mouth cavity, and colonic absorption systems. Several of these companies may have developed or are developing dry-powder devices that could be used for pulmonary delivery and needle-free devices that could be used for subcutaneous delivery. Many of these companies and entities have greater research and development capabilities, experience, manufacturing, marketing, financial and managerial resources than we do. Accordingly, our competitors may succeed in developing competing technologies, obtaining Food and Drug Administration (FDA) approval for products or gaining market acceptance more rapidly than we can.
      We believe our technology and integrated pulmonary delivery systems approach provides us with important competitive advantages in the delivery of drugs compared with currently known alternatives. While we believe that the capabilities of our AERx and Intraject platforms will provide us with certain important competitive advantages, new drugs or further developments in alternative drug delivery methods may provide greater therapeutic benefits, or comparable benefits at lower cost, in a given drug application than the AERx or Intraject systems.
      Several companies have developed or are developing products that will compete with our technology platforms. Some are marketing and developing dry-powder and other devices that could have applications for pulmonary drug delivery, including Nektar Therapeutics (formerly Inhale Therapeutic Systems, Inc.) and Alkermes Pharmaceuticals, Inc. These companies also have collaborative arrangements with corporate partners for the development of pulmonary delivery systems for insulin. There are also several companies that are marketing and developing needle-free injection systems, including Antares Pharma Inc., Bioject Medical Technologies Inc., Biovalve Technologies, Inc., Crossject and Penjet Corporation. There can be no assurance that competitors will not introduce products or processes competitive with or superior to ours.
Government Regulation
      All medical devices and drugs, including our products under development, are subject to extensive and rigorous regulation by the federal government, principally the FDA, and by state and local governments. If these products are marketed abroad, they also are subject to export requirements and to regulation by foreign governments. The regulatory clearance process is generally lengthy, expensive and uncertain. The Federal Food, Drug, and Cosmetic Act, and other federal statutes and regulations, govern or influence the development, testing, manufacture, labeling, storage, approval, advertising, promotion, sale and distribution of such products. Failure to comply with applicable FDA and other regulatory requirements can result in sanctions being imposed on us or the manufacturers of our products, including warning letters, fines, product recalls or seizures, injunctions, refusals to permit products to be imported into or exported out of the United States, refusals of the FDA to grant approval of drugs or to allow us to enter into government supply contracts, withdrawals of previously approved marketing applications and criminal prosecutions.
      The activities required before a new drug product may be marketed in the United States include preclinical and clinical testing. Preclinical tests include laboratory evaluation of product chemistry and other characteristics and animal studies to assess the potential safety and efficacy of the product as formulated. The FDA under a series of regulations called the current Good Laboratory Practice regulations regulates Pre-clinical studies. Violations of these regulations can, in some cases, lead to invalidation of the studies, requiring such studies to be replicated.
      The pre-clinical work necessary to administer investigational drugs to human subjects is summarized in an Investigational New Drug application to the FDA. FDA regulations provide that human clinical trials may begin 30 days following submission of an Investigational New Drug application, unless the FDA advises otherwise or requests additional information. There is no assurance that the submission of an Investigational New Drug application will eventually allow a company to begin clinical trials. Once trials have begun, either we or the FDA may place them on “clinical hold” to stop them, because of concerns, for example, about the conduct of the study or the safety of the product being tested.

12


Table of Contents

      Clinical testing involves the administration of the drug to healthy human volunteers or to patients under the supervision of a qualified principal investigator, usually a physician, pursuant to FDA-reviewed protocol. Each clinical study is conducted under the auspices of an Institutional Review Board at each of the institutions at which the study will be conducted. An Institutional Review Board will consider, among other things, ethical factors, the safety of human subjects, informed consent requirements and the possible liability of the institution. Human clinical trials typically are conducted in three sequential phases, but the phases may overlap. Typically, Phase 1 trials consist of testing the product in a small number of normal volunteers, primarily for safety, at one or more dosage levels, as well as characterization of a drug’s pharmacokinetic and/or pharmacodynamic profile. In Phase 2 clinical trials, in addition to safety, the efficacy of the product is usually evaluated in the patient population. Phase 3 trials, the basis for approval, typically involve additional testing for safety and clinical efficacy in an expanded population at geographically dispersed sites.
      A company seeking FDA approval to market a new drug must file a New Drug Application (NDA) with the FDA pursuant to the Federal Food, Drug and Cosmetic Act. In addition to reports of the pre-clinical and clinical trials conducted under an effective Investigational New Drug application, the NDA includes Chemistry, Manufacturing and Controls (CMC) information pertaining to the preparation of the drug substance (active ingredient), analytical methods, drug product formulation, details on the manufacture of finished products and proposed product packaging, labeling and storage. Submission of a new drug application does not assure FDA approval for marketing. Based on the Prescription Drug User Fee Act, review of NDAs should result in an action letter within ten months after filing. However, the application approval process can take a year or more to complete, although reviews of treatments for cancer and other life-threatening diseases may be accelerated or expedited. The process may take substantially longer if, among other things, the FDA has questions or concerns about the safety, efficacy or CMC of a product. In general, the FDA requires at least two properly conducted, adequate and well-controlled clinical studies demonstrating safety and efficacy with sufficient levels of statistical assurance.
      Notwithstanding the submission of safety and efficacy data, the FDA ultimately may decide that the application does not satisfy all of its regulatory criteria for approval. The FDA could also determine that there is insufficient data or experience with chronic administration of drugs delivered via the lung for systemic effect to demonstrate that such chronic administration is safe, and could require further studies. The FDA also may require additional clinical tests (i.e., Phase 4 clinical trials) following new drug application approval to confirm safety and efficacy.
      In addition, the FDA may in some circumstances impose restrictions on the use of the drug that may be difficult and expensive to administer. Product approvals may be withdrawn if compliance with regulatory requirements is not maintained or if problems occur after the product reaches the market. The FDA also requires reporting of certain safety and other information that becomes known to a manufacturer of an approved drug. The product testing and approval process is likely to take a substantial number of years and involves expenditure of substantial resources. There is no guarantee that any approval will be granted on a timely basis, or at all. Upon approval, a prescription drug may only be marketed for the approved symptoms in the approved dosage forms and at the approved dosage.
      Among the other requirements for drug product approval is the requirement that the prospective manufacturer conform to the FDA’s Good Manufacturing Practices (GMP) regulations for drugs. In complying with the GMP regulations, manufacturers must continue to expend time, money and effort in production, record keeping and quality control to assure that the product meets applicable specifications and other requirements. The FDA periodically inspects manufacturing facilities in the United States to assure compliance with applicable GMP requirements. A company’s failure to comply with the GMP regulations or other FDA regulatory requirements could have a material adverse effect on that company’s business.
      Products marketed outside the United States that are manufactured in the United States are subject to certain FDA regulations, as well as regulation by the country in which the products are to be sold. We also would be subject to foreign regulatory requirements governing clinical trials and drug product sales if products are marketed abroad. Whether or not FDA approval has been obtained, approval of a product by the comparable regulatory authorities of foreign countries must be obtained prior to the marketing of the product

13


Table of Contents

in those countries. The approval process varies from country to country and the time required may be longer or shorter than that required for FDA approval.
      We are subject to numerous federal, state and local laws relating to such matters as:
  •  controlled drug substances;
 
  •  safe working conditions;
 
  •  manufacturing practices;
 
  •  environmental protection;
 
  •  fire hazard control; and
 
  •  disposal of hazardous or potentially hazardous substances.
      The United States Drug Enforcement Agency (DEA) regulates controlled drug substances, such as morphine and other narcotics. Establishments handling controlled drug substances must be registered and inspected by the DEA and may be subject to export, import, security and production quota requirements. In addition, advertising and promotional materials are, in certain instances, subject to regulation by the Federal Trade Commission. There can be no assurance that we will not be required to incur significant costs to comply with such laws and regulations in the future or that such laws or regulations will not have a material adverse effect upon our business.
      Product development and approval within this regulatory framework takes a number of years, involves the expenditure of substantial resources and is uncertain. Many drug products ultimately do not reach the market because they are not found to be safe or effective or cannot meet the FDA’s other regulatory requirements. In addition, there can be no assurance that the current regulatory framework will not change or that additional regulation will not arise at any stage of our product development that may affect approval, delay the submission or review of an application or require additional expenditures by us. There can be no assurance that we will be able to obtain necessary regulatory clearances or approvals on a timely basis, if at all, for any of our products under development, and delays in receipt or failure to receive such clearances or approvals, the loss of previously received clearances or approvals, or failure to comply with existing or future regulatory requirements could have a material adverse effect on our business.
Scientific Advisory Board
      We have assembled a Scientific Advisory Board comprised of scientific and development advisors who provide expertise, on a consulting basis, in the areas of pain management, allergy and immunology, pharmaceutical development and drug delivery, but are employed elsewhere on a full-time basis. As a result, they can only spend a limited amount of time on our affairs. The Scientific Advisory Board assists us on issues related to potential product applications, product development and clinical testing. Its members, and their affiliations and areas of expertise, include:
                 
Name   Affiliation   Area of Expertise
         
Peter R. Byron, Ph.D. 
  Medical College of Virginia, Virginia Commonwealth University     Aerosol Science/Pharmaceutics  
Peter S. Creticos, M.D. 
  The Johns Hopkins University School of Medicine     Allergy/Immunology/Asthma  
Igor Gonda, Ph.D. 
    Acrux Limited       Drug Delivery  
Craig M. Pratt, M.D. 
    Baylor College of Medicine       Clinical Cardiology  
Robert E. Ratner, M.D. 
    MedStar Research Institute       Endocrinology  
Employees
      As of February 28, 2005, we had 95 employees. Of these, 69 are involved in research and development, product development and commercialization; 26 are involved in business development, finance and administration. The reduction in headcount from 229 as of December 31, 2004 to 95 employees at February 28, 2005

14


Table of Contents

was due to the fact that Novo Nordisk Delivery Technologies hired 126 Aradigm employees in connection with the closing of the Restructuring Agreement with Novo Nordisk. Our future success is dependent on attracting and retaining highly skilled scientific, sales and marketing and senior management personnel. Competition for such skills is intense, and there is no assurance that we will continue to be able to attract and retain high-quality employees. Our employees are not represented by any collective bargaining agreement. We consider our relations with our employees to be excellent.
Corporate History and Website Information
      We were incorporated in California in 1991. Our principal executive offices are located at 3929 Point Eden Way, Hayward, California 94545, and our main telephone number is (510) 265-9000. Investors can obtain access to this annual report on Form 10-K, our quarterly reports on Form 10-Q, our current reports on Form 8-K and all amendments to these reports, free of charge, on our website at http://www.aradigm.com as soon as reasonably practicable after such filings are electronically filed with the SEC. The public may read and copy any material we file with the SEC at the SEC’s Public Reference Room at 450 Fifth Street, N.W., Washington, D.C., 20549. The public may obtain information on the operations of the Public Reference Room by calling the SEC at 1-800-SEC-0330. The SEC maintains an Internet site, http://www.sec.gov that contains reports, proxy and information statements and other information regarding issuers that file electronically with the SEC.
Directors and Executive Officers
      The directors and executive officers of Aradigm and their ages as of February 28, 2005 are as follows:
             
Name   Age   Position
         
V. Bryan Lawlis, Ph.D.
    53     President, Chief Executive Officer and Director
Thomas C. Chesterman
    45     Senior Vice President and Chief Financial Officer
Klaus D. Kohl, Ph.D
    54     Senior Vice President, Quality and Technical Director
Steven J. Farr, Ph.D.
    46     Senior Vice President, Chief Scientific Officer
Bobba Venkatadri
    61     Senior Vice President, Operations
Babatunde A. Otulana, M.D
    48     Vice President, Clinical & Regulatory Affairs
John J. Turanin
    47     Vice President, Program Management and Corporate Planning
Norma L. Milligin
    66     Vice President, Human Resources
Virgil D. Thompson(2)
    65     Director and Chairman of the Board
Frank H. Barker(1)(3)
    74     Director
Stan M. Benson(2)(3)
    54     Director
Igor Gonda(2)
    57     Director
Stephen O. Jaeger(1)
    60     Director
John Nehra(3)
    56     Director
Wayne I. Roe(1)
    54     Director
Richard P. Thompson
    53     Director
 
(1)  Member of the Audit Committee.
 
(2)  Member of the Compensation Committee.
 
(3)  Member of the Nominating and Corporate Governance Committee.
      V. Bryan Lawlis, Ph.D., has been a director since February 2005 and served as President and Chief Executive Officer since August 2004. Dr. Lawlis served as President and Operating Officer from June 2003 to August 2004 and as our Chief Operating Officer from November 2001 to June 2003. Previously, Dr. Lawlis founded Covance Biotechnology Services, Inc., a contract biopharmaceutical manufacturing operation, and served as its President and Chief Executive Officer from 1996 to 1999, and as Chairman 1999 to 2001, when it

15


Table of Contents

was sold to Diosynth, RTP, Inc., a division of Akzo Nobel, NV. From 1981 to 1996, Dr. Lawlis was employed at Genencor, Inc., and Genentech, Inc. His last position at Genentech was Vice President of Process Sciences. Dr. Lawlis holds a B.A. in Microbiology from the University of Texas at Austin, and a Ph.D. in Biochemistry from Washington State University.
      Thomas C. Chesterman has served as our Senior Vice President and Chief Financial Officer since August 2002. From 1996 to 2002, Mr. Chesterman was Vice President and Chief Financial Officer at Bio-Rad Laboratories, Inc., a life-science research products and clinical diagnostics company. From 1993 to 1996, Mr. Chesterman was Vice President of Strategy and Chief Financial Officer of Europolitan AB, a telecommunications company. Mr. Chesterman holds a B.A. from Harvard University, and an MBA in Finance and Accounting from the University of California at Davis.
      Klaus D. Kohl, Ph.D., has served as our Senior Vice President, Quality and Technical Director, iDMS program from August 2002 until January 26, 2005, when he was hired by Novo Nordisk Delivery Technologies in connection with the completion of the restructuring transaction with Novo Nordisk. From January 2002 to August 2002, Dr. Kohl served as Vice President, Quality. From October 2000 to December 2001, he held the position of Vice President, Quality. Dr. Kohl was Quality Manager of GE Bayer Silicones, a joint venture of General Electric Company and Bayer Corporation. From 1996 to 1998, Dr. Kohl was Vice President of Quality Assurance, Pharmaceutical Division, Bayer Corporation North America. Dr. Kohl joined Bayer in 1985 and held various positions in quality assurance/drug product development in the United States and in Europe. Previously, Dr. Kohl spent more than seven years in basic research at the Research Center Juelich, Germany, and the Max Planck Institute in Dortmund, Germany. Dr. Kohl received his undergraduate degree in Mathematics and Physics from the University of Marburg, Germany, and his Ph.D. from the University of Aachen, Germany.
      Stephen J. Farr, Ph.D., has served as our Senior Vice President, Chief Scientific Officer since April 2003. Since 1995, Dr. Farr served in various positions at Aradigm including as Director, Pharmaceutical Sciences, Senior Director and Vice President, Pharmaceutical Sciences, and Vice President, Research and Development. From September 1985 to December 1994, Dr. Farr was Lecturer and later Senior Lecturer in the Welsh School of Pharmacy, Cardiff University, United Kingdom. Dr. Farr was a founder and director of Cardiff Scintigraphics Ltd., a contract research organization. Dr. Farr holds a B.Sc. in Pharmacy from DeMontfort University, and a Ph.D. in pharmaceutics from the University of Wales. Dr. Farr is a Visiting Associate Professor in the Department of Pharmaceutics, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia.
      Bobba Venkatadri has served as our Senior Vice President, Operations, since June 2003. Mr. Venkatadri has over 30 years of U.S. and international senior executive leadership experience in pharmaceutical and biotechnology manufacturing. Prior to joining Aradigm, Mr. Venkatadri was Executive Vice President of Operations for Diosynth RTP, Inc., a division of Akzo Nobel AV from January 2001. Mr. Venkatadri served as Chief Executive Officer of Molecular Biosystems, Inc. from 1995 to 2000, and Executive Vice President of Centocor, Inc. from 1992 to 1995. Mr. Venkatadri held multiple positions with Warner-Lambert Company from 1967 to 1992 including, President of Warner-Lambert Indonesia, Vice President of Warner-Lambert Puerto Rico, and Vice President, U.S. Operations of Parke-Davis. Mr. Venkatadri holds a Masters Degree in Pharmacy from Andhra University, India, and an MBA in Finance from Fairleigh Dickinson University.
      Babatunde A. Otulana, M.D., has served as our Vice President, Clinical and Regulatory Affairs since October 1997. From 1991 to September 1997, Dr. Otulana was a Medical Reviewer in the Division of Pulmonary Drug Products at the Center for Drug Evaluation and Research, Food and Drug Administration. Dr. Otulana currently serves as an Assistant Clinical Professor in Pulmonary Medicine at the school of Medicine, University of California, Davis. Dr. Otulana obtained his M.D. from the University of Ibadan, Nigeria, and completed a Pulmonary Fellowship at Papworth Hospital, University of Cambridge, U.K., and at Howard University Hospital, Washington, D.C.
      John J. Turanin has served as our Vice President, Corporate Planning and Program Management since May 2004. From October 1996 to May 2004, Mr. Turanin held several positions in business development and project management at Aradigm and most recently was Director of Project Management. From August 1987

16


Table of Contents

to September 1996, Mr. Turanin held several positions at Invacare Corporation, a leading manufacturer of home medical equipment, where his last position was Senior General Manager of Respiratory Products for Invacare. Mr. Turanin holds an MBA from the University of Pittsburgh and a B.A. in Business from Indiana University of Pennsylvania.
      Norma L. Milligin has served as our Vice President, Human Resources, since September 1998. From January 1995 to August 1998, Ms. Milligin worked as a consultant in the human resources area for a number of firms. From 1985 to January 1994, Ms. Milligin held positions as Vice President of Human Resources at LifeScan, Inc, a Johnson & Johnson company, and at Chemtrak, Inc., a medical device company. From 1978 to 1985, Ms. Milligin also held a number of senior human resource positions at Syntex Corporation, a pharmaceutical company. Ms. Milligin has taught organizational behavior at Pepperdine University, and holds a B.S. in Business from the University of Colorado, and an MBA from Pepperdine University.
      Virgil D. Thompson has been a director since June 1995 and has been Chairman of the Board since January 2005. Since November 2002, Mr. Thompson has been President and Chief Executive Officer of Angstrom Pharmaceuticals Inc., a pharmaceutical company. From September 2000 to November 2002, Mr. Thompson was President, Chief Executive Officer and Director of Chimeric Therapies, Inc., a biotechnology company. From May 1999 until September 2000, Mr. Thompson was the President, Chief Operating Officer and a Director of Bio-Technology General Corp., (now Saviant Pharmaceuticals, Inc.), a pharmaceutical company. From January 1996 to April 1999, Mr. Thompson was the President and Chief Executive Officer and a Director of Cytel Corporation, a biopharmaceutical company. From 1994 to 1996, Mr. Thompson was President and Chief Executive Officer of Cibus Pharmaceuticals, Inc., a drug delivery device company. From 1991 to 1993, Mr. Thompson was President of Syntex Laboratories, Inc., a pharmaceutical company. Mr. Thompson holds a B.S. in Pharmacy from Kansas University and a J.D. from The George Washington University Law School. Mr. Thompson is also a director of Questcor Pharmaceuticals, Inc. and Savient Pharmaceuticals Inc.
      Frank H. Barker has been a director since May 1999. From January 1980 to January 1994, Mr. Barker served as a company group chairman of Johnson & Johnson, Inc., a diversified healthcare company and was Corporate Vice President from January 1989 to January 1996. Mr. Barker holds a B.A. in Business Administration from Rollins College. Mr. Barker is a director of Catalina Marketing Corporation, a direct-to-consumer marketing company.
      Stan M. Benson has been a director since April 2001. Mr. Benson served as Senior Vice President, Sales and Marketing of Amgen Inc., a biotechnology company, from 1995 to 2001. Prior to joining Amgen, Mr. Benson worked at Pfizer Inc., a pharmaceutical company, for 19 years in various senior management positions. Mr. Benson received a B.A. and an M.S. from New York University. Mr. Benson is now retired.
      Igor Gonda, Ph.D. has been a director since September 2001. Dr. Gonda is the Chief Executive Officer and Managing Director of Acrux Limited, a drug-delivery company in Melbourne, Australia. Dr. Gonda was our Chief Scientific Officer until December 2001 and previously held the position of Vice President, Research and Development, from October 1995 until July 2001. From February 1992 to September 1995, Dr. Gonda was a Senior Scientist and Group Leader at Genentech, Inc. Prior to that, Dr. Gonda held academic positions at the University of Aston in Birmingham, UK, and the University of Sydney, Australia. Dr. Gonda has a B.Sc. in Chemistry and a Ph.D. in Physical Chemistry from Leeds University, UK. Dr. Gonda is the Chairman of our Scientific Advisory Board.
      Stephen O. Jaeger has been a director since March 2004. He is currently the Chairman of eBT International, Inc., a software products and services company. He also has held the positions of Chairman, President and Chief Executive Officer since 1999. Prior to joining eBT, Mr. Jaeger was the Executive Vice President and Chief Financial Officer of Clinical Communications Group, Inc. from 1997 to 1998. From 1995 to 1997, Mr. Jaeger served as Vice President, Chief Financial Officer and Treasurer of Applera Corp. Mr. Jaeger was Chief Financial Officer and a director of Houghton Mifflin Company and held various financial positions with the British Petroleum Company, PLC, Weeks Petroleum Limited and Ernst & Young LLP. Mr. Jaeger holds a B.A. in Psychology from Fairfield University and an MBA in Accounting from

17


Table of Contents

Rutgers University and is a Certified Public Accountant. Mr. Jaeger serves on the boards of Savient Pharmaceuticals, Inc. and Arlington Tankers Ltd. Mr. Jaeger is the designated “financial expert” on Savient’s Audit Committee and the Chairman of Arlington Tankers’ Audit Committee.
      John M. Nehra has been a director since December 2001. Mr. Nehra is a Special Partner of New Enterprise Associates 10 Limited Partnership (“NEA 10”) and New Enterprise Associates 11, Limited Partnership, both, venture capital partnerships, and a General Partner of NEA VI, NEA VII, NEA VIII and NEA IX. Mr. Nehra is also the managing General Partner of Catalyst Ventures, a venture capital partnership. Prior to joining NEA 10 and its affiliated venture funds in 1989, Mr. Nehra was Managing Director of Alex Brown & Sons Inc., an investment banking firm. Upon joining Alex Brown in 1975, Mr. Nehra was responsible for building the firm’s healthcare research and healthcare banking practice, and forming its capital markets group. Mr. Nehra holds a B.A. from the University of Michigan. Mr. Nehra is a director of Iridex Corporation and Davita Inc. and also serves on the boards of several privately held healthcare companies.
      Wayne I. Roe has been a director since May 1999. Mr. Roe was Senior Vice President of United Therapeutics Corporation, a pharmaceutical manufacturer, from 1999 to 2000. Mr. Roe was Chairman of Covance Health Economics and Outcomes Services, Inc., a strategic marketing firm, from 1996 to 1998. From June 1988 to March 1996, Mr. Roe was the President of Health Technology Associates, a pharmaceutical industry-consulting firm. Mr. Roe received a B.A. from Union College, an M.A. from the State University of New York at Albany and an M.A. from the University of Maryland. Mr. Roe is also a director of Ista Pharmaceuticals Inc., and several privately held companies.
      Richard P. Thompson has been director since June 1994 and served as our President and Chief Executive Officer from June 1994 to June 2003. He served as Chief Executive Officer from June 2003 through July 2004 and Chairman of the Board from 2000 until January 2005. From 1991 to 1994, Mr. Thompson was President of LifeScan, Inc., a diversified health care subsidiary of Johnson & Johnson Company. In 1981, Mr. Thompson co-founded LifeScan, which was sold to Johnson & Johnson in 1986. Mr. Thompson holds a B.S. in Biological Sciences from the University of California at Irvine and an MBA from California Lutheran University.
Item 2. Properties
      At December 31, 2004, we leased a total of approximately 253,898 square feet of office space in two office parks. We leased approximately 163,658 square feet in three buildings in an office park at 3929 Point Eden Way, Hayward, California, and leased 90,240 square feet in one building in an office park located at 2704 West Winton Avenue, Hayward, California. The leases for the various office spaces expire at various times through the year 2016. Minimum annual payments under these leases will be approximately $5.1 million in 2005 and $48.3 million through 2016. Subsequent to the completion of our restructuring transaction with Novo Nordisk on January 26, 2005 Aradigm’s lease commitments are approximately $2.6 million in 2005 and $23.6 million through 2016. See Note 11, Subsequent Events of the financial statements. We use this space for general administrative, product development, clinical, manufacturing and research and development purposes. We believe that our existing facilities are adequate to meet our requirements for the near term.
Item 3. Legal Proceedings
      There are no material pending legal proceedings.
Item 4. Submission of Matters to a Vote of Security Holders
      No matters were submitted to a vote of our security holders during the quarter ended December 31, 2004.

18


Table of Contents

PART II
Item 5. Market for the Registrant’s Common Stock and Related Stockholder Matters
Market Information
      Our common stock is traded on The Nasdaq National Market under the symbol “ARDM.” The following table sets forth the intra-day high and low sale prices for our common stock as reported on The Nasdaq Stock Market for the periods indicated below.
                   
    High   Low
         
2003
               
 
First Quarter
  $ 1.85     $ 0.66  
 
Second Quarter
    3.51       0.84  
 
Third Quarter
    2.25       1.07  
 
Fourth Quarter
    2.65       1.67  
2004
               
 
First Quarter
  $ 2.74     $ 1.81  
 
Second Quarter
    2.27       0.84  
 
Third Quarter
    1.28       0.66  
 
Fourth Quarter
    2.00       1.18  
2005
               
 
First Quarter (through February 28, 2005)
  $ 1.73       1.15  
      On February 28, 2005, there were 72,297,980 holders of record of our common stock.
Dividend Policy
      We have never declared or paid any cash dividends. We currently intend to retain any future earnings to finance the growth and development of our business and therefore do not anticipate paying any cash dividends in the foreseeable future.
Sales of Unregistered Securities
      In December 2004, we issued 8,333,395 shares of common stock in a private placement at a price of $1.50 per share and warrants to purchase 2,083,347 shares of our common stock at $2.10 per share for an aggregate consideration of approximately $12.5 million. The warrants are exercisable at the election of the selling security holders on or prior to December 22, 2008. These securities were not registered when sold and were issued in reliance upon Regulation D of the Securities Act of 1933, as amended (the “Act”). These securities were subsequently registered under the Act.

19


Table of Contents

      The following table summarizes our equity compensation plan information as of December 31, 2004. Information is included for both equity compensation plans approved by our stockholders and equity compensation plans not approved by our stockholders.
                         
    Common stock to       Common stock available for
    be issued upon       future issuance under equity
    exercise of       compensation plans
    outstanding   Weighted-average exercise   (excluding securities
    options and rights   price of outstanding   reflected in column (a))
Plan Category   (1)   options and rights   (1)
             
    (a)   (b)   (c)
Equity compensation plans approved by Aradigm stockholders
    9,415,848     $ 4.44       3,879,960  
Equity compensation plans not approved by Aradigm stockholders
    0       0       0  
                   
Totals:
    9,415,848     $ 4.44       3,879,960  
 
(1)  Includes 13,189,884 and 105,924 shares reserved for future issuance under the Company’s 1996 Equity Incentive Plan (the “1996 EIP”), and the 1996 Non-Employee Directors’ Plan, respectively. We also have 730,455 shares authorized for the Employee Stock Purchase Plan. The 1996 EIP contains an evergreen provision whereby the aggregate number of shares reserved for issuance is increased annually by a number of shares equal to 6% of the issued and outstanding common stock as determined on the date of the annual meeting of shareholders beginning with the 2001 meeting (or some lesser number of shares as determined by the board of directors). Under the 1996 EIP, the aggregate increase in the number of shares to be reserved by operation of the evergreen provision will not exceed 10,000,000.

20


Table of Contents

Item 6. Selected Financial Data
      The following selected financial data should be read in conjunction with the “Management’s Discussion and Analysis of Financial Condition and Results of Operations” and the financial statements and notes thereto included in this Report on Form 10-K.
                                           
    Years Ended December 31,
     
    2004   2003   2002   2001   2000
                     
Statements of Operations Data:
                                       
Contract and license revenues
  $ 28,045     $ 33,857     $ 28,967     $ 28,916     $ 20,303  
Operating expenses:
                                       
 
Research and Development
    46,477       49,636       54,680       58,836       48,176  
 
General and Administrative
    11,934       10,391       10,394       9,355       9,271  
                               
 
Total Operating Expenses
    58,411       60,027       65,074       68,191       57,447  
                               
Loss from operations
    (30,366 )     (26,170 )     (36,107 )     (39,275 )     (37,144 )
Interest income
    194       338       818       1,324       3,110  
Other income(2)
                      6,675        
Interest expense
    (17 )     (138 )     (642 )     (1,081 )     (1,528 )
                               
Net loss
    (30,189 )     (25,970 )     (35,931 )     (32,357 )     (35,562 )
Deemed dividend
                      (10,722 )      
                               
Net loss applicable to common shareholders
  $ (30,189 )   $ (25,970 )   $ (35,931 )   $ (43,079 )   $ (35,562 )
                               
Basic and diluted loss per share applicable to common shareholders(1):
  $ (0.47 )   $ (0.52 )   $ (1.19 )   $ (1.98 )   $ (2.07 )
                               
      63,705       50,196       30,261       21,792       17,196  
                               
Balance Sheet Data:
                                       
Cash, cash equivalents and short term investments
  $ 16,763     $ 29,770     $ 31,443     $ 71,164     $ 44,381  
Working capital
    4,122       19,708       16,039       48,308       19,862  
Total assets
    79,741       95,218       97,129       132,100       71,371  
Noncurrent portion of notes payable and capital lease obligations
                497       2,427       6,230  
Redeemable convertible preferred stock
    23,669       23,669       30,665       30,735        
Accumulated deficit
    (245,623 )     (215,436 )     (189,443 )     (153,535 )     (110,441 )
Total shareholders’ equity
  $ 35,754     $ 52,970     $ 41,410     $ 71,149     $ 37,785  
 
(1)  See Note 1 of Notes to Financial Statements for an explanation of shares used in computing basic and diluted net loss per share.
 
(2)  Other income consists of the gain related to forgiveness of outstanding notes and interests by Genentech, previously classified as an extraordinary item. In 2002, the Company early adopted Statement of Financial Accounting Standard (“SFAS”) 145, “Rescission of FASB Statements No. 4, 44 and 64, Amendment of FASB 13 and Technical Corrections”, which requires the reclassification of this type of extraordinary item as a component of operating results.

21


Table of Contents

Item 7. Management’s Discussion and Analysis of Financial Condition and Results of Operations
      The discussion below contains forward-looking statements that are based on the beliefs of management, as well as assumptions made by, and information currently available to, management. Our future results, performance or achievements could differ materially from those expressed in, or implied by, any such forward-looking statements as a result of certain factors, including, but not limited to, those discussed in this section as well as in the section entitled “Risk Factors” and elsewhere in this report. This discussion should be read in conjunction with the financial statements and notes to the financial statements contained in this report.
Overview
      Since our inception in 1991, we have been engaged in the development of needle-free drug delivery systems. As of December 31, 2004 we had an accumulated deficit of $245.6 million. We have not been profitable since inception and expect to incur additional operating losses over the next several years as research and development efforts, preclinical and clinical testing activities and manufacturing scale-up efforts expand and as we plan and build our late-stage clinical and early commercial production capabilities. To date, we have not had any material product sales and do not anticipate receiving any revenue from the sale of products in 2005. The sources of working capital have been equity financings, equipment lease financings, contract and license revenues and interest earned on investments.
      We have performed initial feasibility work on a number of compounds and have been compensated for expenses incurred while performing this work in several cases pursuant to feasibility study agreements with third parties. Once feasibility is demonstrated with respect to a potential product, we seek to enter into development contracts with pharmaceutical corporate partners.
      During 2004, our collaborative agreement with Novo Nordisk A/S contributed approximately 96% of our total contract revenues. From the inception of our collaboration in June 1998 through December 31, 2004, we have received from Novo Nordisk A/S approximately $141.1 million in product development payments, approximately $13.0 million in milestone payments and $35.0 million from the purchase of our common stock by Novo Nordisk A/S and its affiliates. During the same period, of the payments received, approximately $135.0 million of the product development payments and $7.8 million of milestone payments have been recognized as contract revenue and $11.3 million has yet to be recognized over the life of the project. Pursuant to the collaborative agreement with Novo Nordisk A/S, we were to receive approximately $38.0 million in milestone payments as well as further reimbursement for product development expenses in connection with the insulin program. Additional milestone payments and product development payments would be paid by Novo Nordisk A/S if the parties decide to jointly develop additional AERx products under the agreement.
      As of January 26, 2005, we completed the restructuring of our AERx iDMS program, pursuant to the Restructuring Agreement entered into with Novo Nordisk A/S and Novo Nordisk Delivery Technologies, Inc. Under the terms of the Restructuring Agreement we sold certain equipment, leasehold improvements and other tangible assets currently utilized in the AERx iDMS program to Novo Nordisk Delivery Technologies, for a cash payment of approximately $55.3 million in which we received net proceeds of $51.3 million after refund of approximately $4.0 million of cost advances made by Novo Nordisk. Our expenses related to this transaction for legal and other consulting costs were approximately $1.1 million. We believe the asset sale will:
  •  provide needed working capital to accelerate the pursuit of opportunities for our AERx and Intraject systems;
 
  •  relieve us of the financial burden of raising an estimated $100 million in capital that would be required to provide manufacturing capability for the AERx iDMS product launch; and
 
  •  also allow us to retain a financial interest in the AERx iDMS program through future royalty payments
      Under the terms of the Restructuring Agreement, Novo Nordisk Delivery Technologies hired 126 of our employees and will perform contract manufacturing for us of AERx iDMS-identical devices and dosage forms filled with compounds provided by us in support of preclinical and initial clinical development by us of other

22


Table of Contents

AERx products. As a result of the restructuring transaction, we expect our research and development spending to decrease as we increase our focus on self-initiated studies.
      As of February 28, 2005 Novo Nordisk A/S, together with its affiliates, beneficially owned 7,868,369 shares of our common stock and is considered a related party. In connection with the restructuring transaction, we entered into an amendment of the common stock purchase agreement in place with Novo Nordisk deleting the provisions whereby we can require Novo Nordisk to purchase certain amounts of common stock and imposing certain restriction on the ability of Novo Nordisk to sell shares of our common stock that it holds.
      We have additional programs in development with disclosed and undisclosed partners. It is our policy not to disclose the partner and/or the drug until a long-term development agreement has been established; both parties agree to highlight a clinical advancement in the program or under special circumstances in which both parties agree to disclosure. In 2002, we announced successful clinical results from one partnered trial with interferon alpha when an abstract was accepted at a leading scientific session, in which the partner was not disclosed. In addition, a gene therapy collaboration with geneRx+ was disclosed that provides certain potentially beneficial licensing rights to Aradigm. In 2004 we executed a development and licensing agreement with Defense R&D Canada for the development of liposomal ciprofloxacin for the treatment of respiratory infections including biological terrorism-related inhalation anthrax.
Intraject/Sumatriptan Needle-Free Subcutaneous Delivery System
      In May 2003, we announced the acquisition of selected assets from Weston Medical relating to Weston Medical’s Intraject needle-free drug delivery system. Weston Medical developed a proprietary needle-free drug delivery system, successfully moved it through the early-stage development process and signed several commercial agreements. In September 2002, Weston Medical announced that it had encountered certain performance problems associated with the system’s configuration and that its program would be delayed until those problems could be resolved. Subsequently, Weston Medical was unable to secure the financing needed to continue its programs and was forced into bankruptcy administration in February 2003. We acquired select assets of Weston Medical, including the Intraject technology, related manufacturing equipment with an approximate book value of $22 million and intellectual property for a total of approximately $2 million in initial purchase price and approximately an additional $1 million in subsequent transfer and additional capital costs. The purchase price and additional costs were allocated to the major pieces of purchased commercial equipment for the production of Intraject and were recorded in fixed assets as construction in progress. These assets, along with subsequent additions to the commercial equipment, will be depreciated at the time commercial manufacturing begins. No costs or expense were allocated to intellectual property or in process research and development on a pro-rata basis, because of the lack of market information, the stage of development and the immateriality of any allocation to intellectual property or in process research and development based on the substantial value of the tangible assets acquired.
      In October 2004, we announced positive results from the Clinical Performance Verification trial of our Intraject needle-free delivery system in which the final design of the system demonstrated an excellent delivery profile. Results showed that the corrected system demonstrated successful injection performance reliability and that the current design presented commercially viable delivery parameters. Following the results from the configuration trial, we initiated a pilot pharmacokinetic study comparing Intraject with Sumatriptan, a treatment for migraines, to the currently marketed needle-injected product. The trial was a randomized, open-label, single-dose, crossover study evaluating the pharmacokinetics of sumatriptan at three injection sites (abdomen, thigh, and arm) in 18 healthy adult male and female volunteers.
      Our most advanced Intraject product is being developed to deliver sumatriptan for migraine sufferers. As our clinical data to date indicate a clear preference by patients for the Intraject system over the currently available needle-based therapy, we believe that this application could offer significant benefits over currently marketed products. We believe that the easy-to-use, patient friendly approach will assist patients in managing their migraines. In November 2004, we announced clinical results from a pilot pharmacokinetic study demonstrating that Intraject was bioequivalent to the currently injectable product. We intend to continue this

23


Table of Contents

application as a self-initiated study with the goal of partnering the program for commercialization. There can be no assurance that this development program will be successful.
      We plan to manufacture clinical lots for pivotal bioequivalence studies and to initiate these studies in 2005. With our current development timeline, we anticipate commercial launch of the product in 2007. It is our intent to proceed with clinical development while concurrently identifying a marketing partner to commercialize this product and deliver royalties to Aradigm based upon net sales.
      There can be no assurance that the Intraject sumatriptan development program or any other Intraject development program will be successful.
Critical Accounting Policies and Estimates
      We consider certain accounting policies related to revenue recognition, impairment of long-lived assets and the use of estimates to be critical accounting policies that require the use of significant judgments and estimates relating to matters that are inherently uncertain and may result in materially different results under different assumptions and conditions.
Revenue Recognition
      Contract revenues consist of revenue from collaboration agreements and feasibility studies. We recognize revenue under the provisions of the Securities and Exchange Commission issued Staff Accounting Bulletin No. 104, “Revenue Recognition” (SAB 104). Under the agreements, revenue is recognized as costs are incurred. Deferred revenue represents the portion of all refundable and nonrefundable research payments received that have not been earned. In accordance with contract terms, milestone payments from collaborative research agreements are considered reimbursements for costs incurred under the agreements and, accordingly, are generally recognized as revenue either upon the completion of the milestone effort when payments are contingent upon completion of the effort or are based on actual efforts expended over the remaining term of the agreements when payments precede the required efforts. Costs of contract revenues are approximate to or are greater than such revenue and are included in research and development expenses. Refundable development and license fee payments are deferred until the specified performance criteria are achieved. Refundable development and license fee payments are generally not refundable once the specific performance criteria are achieved and accepted.
Long-Lived Assets
      The Company reviews for impairment whenever events or changes in circumstances indicate that the carrying amount of property and equipment may not be recoverable in accordance with SFAS 144, “Accounting for the Impairment or Disposal of Long-Lived Assets.” Determination of recoverability is based on an estimate of undiscounted future cash flows resulting from the use of the asset and its eventual disposition. In the event that such cash flows are not expected to be sufficient to recover the carrying amount of the assets, the assets are written down to their estimated fair values and the loss is recognized on the Statements of Operations.
Use of Estimates
      The preparation of financial statements in conformity with generally accepted accounting principles requires us to make estimates and assumptions that affect the amounts reported in the financial statements and accompanying notes to the financial statements. These estimates include useful lives for property and equipment and related depreciation calculations, estimated amortization period for payments received from product development and license agreements as they relate to the revenue recognition of deferred revenue and assumptions for valuing options, warrants and the beneficial conversion feature of preferred stock. Actual results could differ from these estimates.

24


Table of Contents

Results of Operations
Years Ended December 31, 2004, 2003 and 2002
      Contract Revenues. We reported revenues from collaborative contracts of $28.0 million in 2004, compared to $33.9 million in 2003 and $29.0 million in 2002. The 17% decrease in revenue in 2004 compared to 2003 is primarily due to decreases in partner-funded project development revenue from Novo Nordisk A/S, which was $27.0 million in 2004 compared to $33.5 million in 2003 and offset by contract revenue from other partner-funded programs, which was $1.0 million in 2004 and $311,000 in 2003. The increase in other partner revenue was the result of initiating four new feasibility projects in 2004. The revenue in 2002 consisted of $26.9 million from partner-funded project development revenue from Novo Nordisk A/S and $2.1 million from other partner-funded project development programs. Costs associated with contract-research revenue are included in research and development expenses.
      As a result of the restructuring transaction, our contract revenue from our development agreement with Novo Nordisk will cease in 2005. We will record project development revenue from Novo Nordisk A/ S for the first 26 days of 2005 of approximately $2.1 million. As a result of the restructuring transaction we are no longer obligated to continue work related to the non-refundable milestone payment from Novo Nordisk related to the commercialization of AERx and will recognize $5.2 million, the remaining balance of the deferred revenue associated with the milestone as revenue in the first quarter of 2005. Subsequently, in 2005 we will record revenue of approximately $800,000 from Novo Nordisk Development Technologies related to transition and support agreements entered into in connection with the restructuring transaction. While we expect some revenues from collaborations with other partners, we cannot reliably predict expected revenues 2005, but they are likely to be significantly lower than in 2004.
      Research and Development Expenses. Research and development expenses decreased in 2004 compared to 2003 and 2002. These expenses were $46.5 million in 2004 compared to $49.6 million in 2003 and $54.7 million in 2002. Research and development expenses as a percentage of total operating expenses were 80% in 2004, 83% in 2003, and 84% in 2002.
      Spending for collaborative and self-initiated research and development projects was as follows (in millions of dollars):
                         
    2004   2003   2002
             
Collaborative
  $ 28.2     $ 33.5     $ 33.4  
Self Initiated
    18.3       16.1       21.3  
                   
Total R&D Spending
  $ 46.5     $ 49.6     $ 54.7  
      Research and development expenses in 2004 decreased by $3.1 million, or 6%, compared to 2003. The decrease in research and development expenses is primarily due to a reduction in collaborative pulmonary delivery development efforts and cost reduction programs including a reduction in force implemented in July 2003 offset by increased self-initiated Intraject program costs. Research and development expenses in 2003 decreased by $5.1 million, or 9%, compared to 2002. The decrease in research and development expenses is primarily due to a reduction in self-initiated pulmonary delivery development efforts and cost reduction programs, including a reduction in force implemented in July 2003 offset by increased Intraject program costs.
      These expenses represent proprietary research expenses as well as the costs related to contract research revenue and include salaries and benefits of scientific and development personnel, laboratory supplies, consulting services and the expenses associated with the development of manufacturing processes.
      Up to January 26, 2005 our lead development program for the AERx platform has been targeted at the pulmonary delivery of insulin in patients with diabetes with our partner Novo Nordisk A/ S. After the successful completion of Phase 2b clinical studies in 2001 and formal presentation of those results in 2002, Aradigm and Novo Nordisk A/ S initiated Phase 3 clinical studies in the third quarter of 2002.
      In April 2004, Aradigm and Novo Nordisk announced results from a planned one-year interim analysis of this study. This analysis, designed to examine efficacy of the trial without unblinding it, showed that the

25


Table of Contents

primary efficacy endpoints in achieving HbA1c levels were being met. However, a secondary efficacy endpoint of post meal blood glucose control was found not to be equivalent between the two endpoints. As a result of this, Novo Nordisk examined the safety portion of the study. Results showed that the trial had achieved all of the safety endpoints including favorable lung function tests and clear chest x-rays. To investigate the results with respect to secondary efficacy endpoints, Novo Nordisk initiated a pharmacokinetic/pharmacodynamic study in these Type 1 patients. Novo Nordisk has indicated that it will evaluate the results of this trial in connection with its planning for additional trials.
      Our future research and development efforts will be focused on the development and commercialization of the Intraject system and AERx projects, both through self-initiated activities and collaborations with other parties, However, future research and development expenditures cannot be predicted reliably as we depend in part upon continued success and funding levels supported by our existing development collaborations, as well as entering into new collaborative agreements. As a result of the restructuring transaction with Novo Nordisk, we expect our 2005 research and development expenses to decrease by at least 50% from its level in 2004. Depending on the partner collaborations entered into in 2005 our research and development expenses may increase above the level of our self-initiated projects.
      We have other partner-funded and self-initiated programs in development. Future research and development efforts for these partner-funded programs are difficult to predict at this time due to their early stage of development.
      General and Administrative Expenses. General and administrative expenses were $11.9 million in 2004 compared to $10.4 million in 2003 and $10.4 million in 2002. In 2004, general and administrative expenses increased over 2003 general and administrative costs by $1.5 million, resulting primarily from legal and consulting costs associated with the Novo Nordisk and Aradigm Restructuring Agreement, which closed on January 26, 2005. In 2003, general and administrative expenses were consistent with 2002, and reflected increased business development and investor relations expense offset by lower facility and personnel costs. In 2005 we expect general and administrative expense to decrease from 2004 levels by approximately 5% to 10% due to reduced activities resulting from the restructuring transaction with Novo Nordisk.
      Interest Income. Interest income was approximately $200,000 in 2004 compared to $300,000 in 2003 and $800,000 in 2002. The decrease in 2004 and again in 2003 was primarily due to lower average cash and investment balances and to a lesser extent a decrease in interest rates earned on invested cash balances. In 2005 we expect interest income to increase significantly due to our receipt of net proceeds of approximately $11.7 million from a private placement of common stock in December 2004 and net proceeds of approximately, $54.2 million from the January 2005 closing of the restructuring transaction with Novo Nordisk.
      Interest Expense. Interest expense was approximately $20,000 in 2004 compared to $100,000 in 2003 and $600,000 in 2002. The decrease in 2004 is primarily due to lower outstanding capital lease and equipment loan balances under various equipment and lease lines of credit which were completely paid off during 2004. We expect interest expense to be immaterial in 2005.
Liquidity and Capital Resources
      Since inception, we have financed our operations primarily through private placements and public offerings of our capital stock, proceeds from equipment lease financings, contract research funding and interest earned on investments. As of December 31, 2004, we had cash, cash equivalents and short-term investments of approximately $16.8 million.
      In December 2004, we issued 8,333,395 shares of common stock in a private placement at a price of $1.50 per share and warrants to purchase 2,083,347 shares of our common stock at $2.10 per share for an aggregate consideration of approximately $12.5 million, resulting in net proceeds received of $11.7 million after payment of applicable professional and legal costs. The proceeds from this issuance will be used for future operating cash requirements.
      Net cash used in operating activities in 2004 was $23.3 million compared to $24.8 million in 2003 and $30.9 million in 2002. The decrease in net cash used in 2004 when compared to 2003 was the result of a

26


Table of Contents

greater net loss in 2004 compared to 2003 which was more than offset by changes in working capital that resulted in decreased use of cash: a decrease in other current assets, and increases in accounts payable, deferred revenue and accrued compensation. The timing of rent payments reduced other current assets. The increase in accounts payable results primarily from liabilities for expenses associated with the December 2004 private placement, the Novo Nordisk and Aradigm restructuring transaction, and capital expenditures. The smaller decrease in deferred revenue compared to the prior year is due to our partners’ funding future development at a lower level and the reduced rate of amortization of past milestone payments. The increase in accrued compensation was the result of the timing of the last payroll of the year. The decrease in net cash used in 2003 compared to 2002 resulted primarily from a decrease in net loss offset by reductions of accounts payable and deferred revenue. The decrease in accounts payable in 2003 resulted primarily from timing of payments of expenses associated with our development programs and capital expenditures, while the decrease in deferred revenue was due to our partners funding further development at lower level and the amortization of past milestone payments.
      Net cash provided by investing activities in 2004 was $6.7 million compared to cash used of $8.2 million in 2003 and cash used of $18.6 million in 2002. The majority of the $14.9 million increase in cash provided by investing activities during 2004 was due to liquidating investments with longer periods of maturity. Short-term investments at the end of 2004 were $2.5 million compared to $11.4 at the end of 2003, reflecting an $8.9 million transfer from short-term investments to cash and cash equivalents. In addition, capital additions during 2004 of $2.3 million for the acquisition of Intraject assets were $3.1 million less than total capital additions in 2003. The decrease in cash used in 2003 compared to 2002 resulted from reductions in capital expenditures and reduced movement of short-term investments to cash to fund operations. Capital expenditures for 2003 of approximately $5.4 million relate primarily to $3.0 million for the acquisition of Intraject assets, and $2.4 million for commercial projects and development equipment. Capital expenditures in 2002 of approximately $11.2 million related primarily to pulmonary delivery dosage form manufacturing production equipment.
      Net cash provided by financing activities in 2004 was $12.6 million compared to $28.5 million in 2003 and $2.3 million in 2002. Financing activities in 2004 included the sale of common stock through private placements in December 2004, which raised net proceeds of approximately $11.7 million. In addition, net proceeds received from the issuance of common stock upon exercise of stock options and purchase of common stock under the employee stock purchase plan was $911,000. The proceeds were offset by $428,000 of cash used for capital lease obligations. Financing activities in 2003 included the sale of common stock through private placements in March and November 2003, which raised net proceeds of approximately $27.3 million. In addition, net proceeds received from the issuance of common stock upon exercise of warrants and stock options, and under the employee stock purchase plan was $3.1 million. The proceeds were offset by $1.8 million of cash used for capital lease obligations. The net proceeds from issuances of common stock in 2002 were approximately $6.1 million offset by $3.7 million used for capital lease obligations.
      The development of our technology and proposed products has and will continue to require a commitment of substantial funds to conduct the costly and time-consuming research and preclinical and clinical testing activities necessary to develop and refine such technology and proposed products and to bring any such products to market. Our future capital requirements will depend on many factors, including continued progress and the results of the research and development of our technology and drug delivery systems, our ability to establish and maintain favorable collaborative arrangements with others, progress with preclinical studies and clinical trials and the results thereof, the time and costs involved in obtaining regulatory approvals, the cost of development and the rate of scale-up of our production technologies, the cost involved in preparing, filing, prosecuting, maintaining and enforcing patent claims, and the need to acquire licenses or other rights to new technology.
      We continue to review our planned operations through the end of 2005, and beyond. We particularly focus on capital spending requirements to ensure that capital outlays are not expended sooner than necessary. We expect our total capital outlays for 2005 will be approximately $11 million. The majority of these outlays will be associated with completing the commercial scale-up of the Intraject production processes, including process, qualification, and registration batch production for sumatriptan. Currently, we are contractually

27


Table of Contents

committed to approximately $1.5 million of the anticipated 2005 capital outlays. Capital outlays beyond 2005 will depend on our ability to raise additional capital and future partner funding arrangements. We believe that our existing cash balances at December 31, 2004, funding commitments from corporate development partners, proceeds from the restructuring transaction with Novo Nordisk and interest earned on our investments should be sufficient to meet our needs for at least the next 12 months.
      If we make good progress in our development programs, we would expect our cash requirements for capital spending and operations to increase in future periods. We will need to raise additional capital to fund our capital spending and operations before we become profitable. We may seek additional funding through collaborations, borrowing arrangements or through public or private equity financings. There can be no assurance that additional financing can be obtained on acceptable terms, or at all. Dilution to shareholders may result if issuing additional equity securities raises funds. If adequate funds are not available, we may be required to delay, to reduce the scope of, or to eliminate one or more of our research and development programs, or to obtain funds through arrangements with collaborative partners or other sources that may require us to relinquish rights to certain of our technologies or products that we would not otherwise relinquish.
Off-Balance Sheet Financings and Liabilities
      Other than contractual obligations incurred in the normal course of business, we do not have any off-balance sheet financing arrangements or liabilities, guarantee contracts, retained or contingent interests in transferred assets or any obligation arising out of a material variable interest in an unconsolidated entity. We do not have any majority-owned subsidiaries.
Contractual Obligations
      The following summarizes our contractual obligations at December 31, 2004, and the effect such obligations are expected to have on our liquidity and cash flows in future periods (in thousands):
                                         
    Payment Due by Period
     
        Less than       After
Contractual Obligations   Total   1 Year   1-3 Years   3-5 Years   5 Years
                     
Unconditional Purchase Obligations
    1,856       1,856                    
Operating Lease Obligations
    53,389       5,131       9,366       10,225       28,667  
                               
Total Contractual Commitments
  $ 55,245     $ 6,987     $ 9,366     $ 10,225       28,667  
                               
Recent Accounting Pronouncements
      In December 2004, the Financial Accounting Standards Board, or FASB, issued a revision of Financial Accounting Standards No. 123, or SFAS 123R, which requires all share-based payments to employees, including grants of employee stock options, to be recognized in the income statement based on their values. We expect to calculate the value of share-based payments under SFAS 123R using the Black-Scholes model. We plan to adopt SFAS 123R in our fiscal quarter ending September 30, 2005. We expect the adoption of SFAS 123R will have a material impact on our financial statements in that fiscal quarter, but we cannot reasonably estimate the impact of adoption because we expect certain assumptions that can materially affect the calculation of the value share-based payments to employees to change in 2005.
      In March 2004, the FASB issued Emerging Issues Task Force Issue No 03-1, “The Meaning of Other-Than-Temporary Impairment and Its Application to Certain Investments”, or EITF 03-1, which provides new guidance for determining the meaning of other-than-temporary impairment and its application to investments classified as either available-for-sale or held-to-maturity under FASB Statement 115 (including individual securities and investments in mutual funds), and investments accounted for under the cost method or the equity method. Additionally, EITF 03-1 includes new disclosure requirements for investments that are deemed to be temporarily impaired. In September 2004, the FASB delayed the accounting provisions of EITF Issue No. 03-1; however, the disclosure requirements remain effective for annual financial statements for fiscal years ending after December 15, 2003. Our adoption of the disclosure provisions of EITF Issue No. 03-1 did

28


Table of Contents

not have any material effect on our financial position, results of operations, or cash flows. We will evaluate the effect, if any, of EITF Issue No. 03-1 when final guidance is released.
RISK FACTORS
      Except for historical information contained herein, the discussion in this Report on Form 10-K contains forward-looking statements, including, without limitation, statements regarding timing and results of clinical trials, the establishment of corporate partnering arrangements, the anticipated commercial introduction of our products and the timing of our cash requirements. These forward-looking statements involve certain risks and uncertainties that could cause actual results to differ materially from those in such forward-looking statements. Potential risks and uncertainties include, without limitation, those mentioned in this report and in particular the factors described below.
We are an early-stage company.
      You must evaluate us in light of the uncertainties and complexities present in an early-stage company. All of our potential products are in an early stage of research or development. Our potential drug delivery products require extensive research, development and pre-clinical and clinical testing. Our potential products also may involve lengthy regulatory reviews before they can be sold. Because none of our products has yet received approval by the FDA, we cannot assure you that our research and development efforts will be successful, any of our potential products will be proven safe and effective or regulatory clearance or approval to sell any of our potential products will be obtained. Because we have validated only one manufacturing facility, we cannot assure you that any of our potential products can be manufactured in commercial quantities or at an acceptable cost or marketed successfully. Failure to achieve commercial feasibility, demonstrate safety, achieve clinical efficacy, obtain regulatory approval or successfully market products will negatively impact our business.
We have a history of losses and anticipate future losses.
      We have never been profitable, and through December 31, 2004, we have incurred a cumulative deficit of approximately $245.6 million. We have not had any material product sales and do not anticipate receiving any revenue from product sales in 2005. We expect to continue to incur substantial losses over at least the next several years as we:
  •  expand our research and development efforts;
 
  •  expand our preclinical and clinical testing activities;
 
  •  expand our manufacturing efforts; and
 
  •  plan and build our commercial production capabilities.
      To achieve and sustain profitability, we must, alone or with others, develop, obtain regulatory approval for, manufacture, market and sell products using our drug delivery platform. We cannot assure investors that we will generate sufficient product or contract research revenue to become profitable or to sustain profitability.
We may not be able to develop our products successfully.
      Many of our products are at an early stage of development. Before we can begin to sell our products commercially, we will need to invest in substantial additional development and conduct clinical testing. In order to further develop many of our products, we will need to address engineering and design issues. We cannot assure you that we will be successful in addressing these designs, engineering and manufacturing issues. Additionally, we will need to formulate and package drugs for delivery by our AERx and Intraject systems. We cannot assure you that we will be able to do this successfully.
      Even if our delivery technologies have been successfully developed and are commercially feasible for a range of large and small molecule drugs, we cannot assure you that such applications will be commercially

29


Table of Contents

acceptable. For our delivery systems to be commercially viable, we will need to demonstrate that drugs delivered by our systems:
  •  are safe and effective;
 
  •  will not be subject to physical or chemical instability over time and under differing storage conditions; and
 
  •  do not suffer from other problems that would affect commercial viability.
      While our development efforts are at different stages for different products, we cannot assure you that we will successfully develop any products. We may also abandon some or all of our proposed products. If we cannot develop potential products in a timely manner, our business will be impaired.
We may not be able to commercialize products successfully.
      Our success in commercializing our products depends on many factors, including acceptance by health care professionals and patients. Their acceptance of our products will largely depend on our ability to demonstrate our products’ ability to compete with alternate delivery systems with respect to:
  •  safety;
 
  •  efficacy
 
  •  ease of use; and
 
  •  price.
      There can be no assurance that our products will be competitive with respect to these factors or that our partners will be able to successfully market any of them in a timely manner.
We depend on collaborative partners and need additional collaborative partners.
      Our commercialization strategy depends on our ability to enter into agreements with collaborative partners. In particular, our ability to successfully develop and commercialize the AERx insulin Diabetes Management System depends on our relationship with Novo Nordisk A/ S.
      Under the terms of the collaborative agreement with Novo Nordisk A/ S, in effect until the closing of the Restructuring Agreement, Novo Nordisk A/ S has agreed to undertake certain collaborative activities with us, design and conduct advanced clinical trials, fund research and development activities with us, pay us fees upon achievement of certain milestones, and purchase product at a defined premium, pay royalties and/or share gross profits if and when we commercialize a product.
      Under the terms of our current agreements with Novo Nordisk A/ S, Novo Nordisk and its affiliates assumed broad control and responsibility with respect to:
  •  development and commercialization of the AERx diabetes management products; and
 
  •  management and operation of the manufacturing facility for the AERx insulin Diabetes Management System.
      The development and commercialization of the AERx insulin Diabetes Management System will be delayed if Novo Nordisk A/ S fails to conduct these activities in a timely manner or at all.
      In addition, our development partners could terminate their agreements and we have no assurance that we will receive any development and milestone payments. If we do not receive development funds or achieve milestones set forth in the agreements, or if any of our development partners breach or terminate their agreement, our business will be impaired.
      We will also need to enter into agreements with other corporate partners to conduct the clinical trials, manufacturing, marketing and sales necessary to commercialize other potential products. In addition, our ability to apply our delivery systems to any proprietary drugs will depend on our ability to establish and

30


Table of Contents

maintain corporate partnerships or other collaborative arrangements with the holders of proprietary rights to such drugs. We cannot assure you that we will be able to establish such additional corporate partnerships or collaborative arrangements on favorable terms or at all, or that our existing or future corporate partnerships or collaborative arrangements will be successful. We can not assure you that our existing or future corporate partners or collaborators will not pursue alternative technologies or develop alternative products either on their own or in collaboration with others, including our competitors. We could have disputes with our existing or future corporate partners or collaborators. Any such disagreements could lead to delays in the research, development or commercialization of any potential products or could result in time-consuming and expensive litigation or arbitration, which may not be resolved in our favor. If any of our corporate partners or collaborators do not develop or commercialize any product to which it has obtained rights from us, our business could be impaired.
We have limited manufacturing experience.
      We have validated only a single clinical manufacturing facility for disposable packets for our various AERx systems, and pursuant to the Restructuring Agreement with Novo Nordisk A/ S and Novo Nordisk Delivery Technologies, Inc., responsibility for and control of this facility was transferred to Novo Nordisk Delivery Technologies, Inc.
      Either our development partners or we will have to invest significant amounts to attempt to provide for the high-volume manufacturing required for multiple products, and much of this spending will occur before our products are approved. There can be no assurance that:
  •  the design requirements of our pulmonary and subcutaneous systems will make it feasible for us to develop it beyond the current prototype;
 
  •  manufacturing and quality control problems will not arise as we attempt to scale-up; or
 
  •  any scale-up can be achieved in a timely manner or at a commercially reasonable cost.
Failure to address these issues could delay or prevent late-stage clinical testing and commercialization of our products.
      As a result of the Restructuring Agreement with Novo Nordisk A/ S and Novo Nordisk Delivery Technologies, Inc., we have limited capacity to manufacture key components of our drug delivery systems. Under the terms of a Contract Manufacturing Agreement we are entering into with Novo Nordisk Delivery Technologies, Inc. in connection with the restructuring transaction, Novo Nordisk Delivery Technologies, Inc. will supply devices and dosage forms to us for development of our other AERx programs. We may decide to attempt to invest in additional production and manufacturing facilities in order to internally produce critical components of our drug delivery systems including the disposable nozzles, assemble the disposable unit-dose packets and fill the drug into the unit-dose packets. Such investment would be significant and we have limited experience in manufacturing disposable unit-dose packets. There can be no assurance that we can successfully do so in high volumes, in a timely manner, at an acceptable cost, or at all.
      We intend to use contract manufacturers to produce key components, assemblies and subassemblies in the clinical and commercial manufacturing of our delivery devices. There can be no assurance that we will be able to enter into or maintain satisfactory contract manufacturing arrangements. Certain components of our products may be available, at least initially, only from single sources. There can be no assurance that we could find alternate suppliers for any of these components. A delay of or interruption in production resulting from any supply problem could have a material adverse effect on our business.
We rely on a small number of vendors and contract manufacturers to supply us with specialized equipment, tools and components.
      We rely on a small number of vendors and contract manufacturers to supply us with specialized equipment, tools and components for use in our development and manufacturing processes. There can be no assurances that these vendors will continue to supply us with such specialized equipment, tools and

31


Table of Contents

components, nor can there be any assurances that we could find alternative sources for such specialized equipment and tools. A delay or interruption in development or manufacturing resulting from our inability to acquire the equipment, tools and components we need could have a material adverse effect on our business.
We will need additional capital and our ability to find additional funding is uncertain.
      Our operations to date have consumed substantial and increasing amounts of cash. We expect the negative cash flow from operations to continue in the foreseeable future. We will need to commit substantial funds to develop our technology and proposed products. We will have to continue to conduct costly and time-consuming research and preclinical and clinical testing to develop, refine and commercialize our technology and proposed products. Our future capital requirements will depend on many factors, including:
  •  progress in researching and developing our technology and drug delivery systems;
 
  •  our ability to establish and maintain favorable collaborative arrangements with others;
 
  •  progress with preclinical studies and clinical trials;
 
  •  time and costs to obtain regulatory approvals;
 
  •  costs of development and the rate at which we expand our production technologies;
 
  •  costs of preparing, filing, prosecuting, maintaining and enforcing patent claims; and
 
  •  our need to acquire licenses or other rights to technology.
      Since inception, we have financed our operations primarily through private placements and public offerings of our capital stock, proceeds from equipment lease financings, contract research funding and interest earned on investments.
      We believe that our existing cash balances at December 31, 2004, funding commitments from corporate development partners, proceeds from the restructuring transaction with Novo Nordisk and interest earned on our investments should be sufficient to meet our needs for at least the next 12 months. However, there can be no assurances that these sources of funding will be sufficient, that our cash requirements will not change or that funding commitments from our corporate development partners will not be amended or terminated.
      We will need to raise additional capital to fund our capital spending and operations before we become profitable. We may seek additional funding through collaborations, borrowing arrangements or through public or private equity financing. We cannot assure you that additional financing can be obtained on acceptable terms, or at all. Dilution to shareholders may result if funds are raised by issuing additional equity securities. If adequate funds are not available, we may be required to delay, to reduce the scope of, or to eliminate one or more of our research and development programs, or to obtain funds through arrangements with collaborative partners or other sources that may require us to relinquish rights to certain of our technologies or products that we would not otherwise relinquish.
We depend upon proprietary technology and the status of patents and proprietary technology is uncertain.
      Our business and competitive position is dependent upon our ability to protect our proprietary technology and avoid infringing on the proprietary rights of others. We have conducted original research on a number of aspects relating to pulmonary drug delivery. While we cannot assure you that any of our patents will provide a significant commercial advantage, these patents are intended to provide protection for important aspects of our technology, including methods for aerosol generation, devices used to generate aerosols, breath control, compliance monitoring certain pharmaceutical formulations, design of dosage forms and their manufacturing, and testing methods. In addition, we are maintaining as trade secrets some of the key elements of our manufacturing technologies; particularly those associated with production of disposable unit-dose packets for the AERx systems.

32


Table of Contents

      In connection with our acquisition of assets from the Weston Medical Group in May 2003, we acquired certain proprietary technologies and other intellectual property relating to the Intraject subcutaneous delivery system. While we have continued to develop the technologies relating to the Intraject system, we cannot assure you that our efforts to protect the proprietary technologies and other intellectual property that we have acquired from Weston will provide adequate protection or significant commercial advantage.
      Our success will depend to a significant extent on our ability to obtain and enforce patents, maintain trade secret protection and operate without infringing on the proprietary rights of third parties. Because the field of needle-free drug delivery is crowded and a substantial number of patents have been issued and because patent positions can be highly uncertain and frequently involve complex legal and factual questions, the breadth of claims obtained in any application or the enforceability of our patents cannot be predicted. Commercialization of pharmaceutical products can also be subject to substantial delays as a result of the time required for product development, testing and regulatory approval.
      We also seek to protect some of these inventions through foreign counterpart applications in selected other countries. Statutory differences in patentable subject matter may limit the protection we can obtain on some of our inventions outside of the United States. For example, methods of treating humans are not patentable in many countries outside of the United States. These and other issues may limit the patent protection we will be able to secure outside of the United States.
      The coverage claimed in a patent application can be significantly reduced before a patent is issued, either in the United States or abroad. Consequently, we do not know whether any of our pending or future patent applications will result in the issuance of patents or, to the extent patents have been issued or will be issued, whether these patents will be subjected to further proceedings limiting their scope, will provide significant proprietary protection or competitive advantage, or will be circumvented or invalidated. Furthermore, patents already issued to us or our pending applications may become subject to dispute, and any disputes could be resolved against us. For example, Eli Lilly and Company has brought an action against us seeking to have one or more employees of Eli Lilly named as co-inventors on one of our patents. This case was determined in our favor in 2004, but there can be no assurance that we will not face other similar claims in the future. In addition, because patent applications in the United States are currently maintained in secrecy until patents issue, and patent applications in certain other countries generally are not published until more than 18 months after they are first filed, and because publication of discoveries in scientific or patent literature often lags behind actual discoveries, we cannot be certain that we were the first creator of inventions covered by pending patent applications or that we were the first to file patent applications on such inventions.
      Our policy is to require our officers, employees, consultants and advisors to execute proprietary information and invention and assignment agreements upon commencement of their relationships with us. We cannot assure you, however, that these agreements will provide meaningful protection for our inventions, trade secrets or other proprietary information in the event of unauthorized use or disclosure of such information.
      We also execute confidentiality agreements with outside collaborators and consultants. However, disputes may arise as to the ownership of proprietary rights to the extent that outside collaborators or consultants apply technological information developed independently by them or others to our projects, or apply our technology to other projects, and we cannot assure you that any such disputes would be resolved in our favor.
      We may incur substantial costs if we are required to defend ourselves in patent suits brought by third parties. These legal actions could seek damages and seek to enjoin testing, manufacturing and marketing of the accused product or process. In addition to potential liability for significant damages, we could be required to obtain a license to continue to manufacture or market the accused product or process and we cannot assure you that any license required under any such patent would be made available to us on acceptable terms, if at all. Litigation may also be necessary to enforce our patents against others or to protect our know-how or trade secrets. Such litigation could result in substantial expense, and we cannot assure you that any litigation would be resolved in our favor.
      Sumatriptan is currently marketed under the trade name Imitrex in oral, nasal and injectable forms and the injectable form is covered by a series of patents, the first of which is scheduled to come off patent in 2006

33


Table of Contents

in Europe and 2007 in the United States. There is an additional U.S. patent relating to the injectable form of sumatriptan that does not expire until 2009, though this patent has been challenged by multiple parties and may be invalidated. There can be no assurance that this patent will be invalidated, and if not, under certain circumstances we will be unable to enter the U.S. market with Intraject sumatriptan until 2009.
We may not obtain regulatory approval for our products on a timely basis, or at all.
      All medical devices and new drugs, including our products under development, are subject to extensive and rigorous regulation by the federal government, principally the FDA, and by state and local government agencies. Such regulations govern the development, testing, manufacture, labeling, storage, approval, advertising, promotion, sale and distribution of such products. Medical devices or drug products that are marketed abroad are also subject to regulation by foreign governments.
      The process for obtaining FDA approvals for drug products is generally lengthy, expensive and uncertain. Securing FDA approvals often requires applicants to submit extensive clinical data and supporting information to the FDA. Even if granted, the FDA can withdraw product clearances and approvals for failure to comply with regulatory requirements or upon the occurrence of unforeseen problems following initial marketing.
      The activities required before a new drug product may be marketed in the United States include pre-clinical and clinical testing and submission of a new drug application with the FDA. Preclinical tests include laboratory evaluation of product chemistry and other characteristics and animal studies to assess the potential safety and efficacy of the product as formulated. Clinical testing involves the administration of the drug to healthy human volunteers or to patients under the supervision of a qualified principal investigator, usually a physician, pursuant to a FDA-reviewed protocol.
      Human clinical trials typically are conducted in three sequential phases, but the phases may overlap. Phase 1 trials consist of testing the product in a small number of patients or normal volunteers, primarily for safety, at one or more dosage levels, as well as characterization of a drug’s pharmacokinetic and/or pharmacodynamic profile. In Phase 2 clinical trials, in addition to safety, the efficacy of the product is usually evaluated in a patient population. Phase 3 trials typically involve additional testing for safety and clinical efficacy in an expanded population at geographically disperse sites. All of the phases of clinical studies must be conducted in conformance with FDA’s bioresearch monitoring regulations.
      We cannot assure you that we will be able to obtain necessary regulatory approvals on a timely basis, if at all, for any of our potential products. Even if granted, regulatory approvals may include significant limitations on the uses for which products may be marketed. Moreover, we cannot assure you that any required approvals, once obtained, will not be withdrawn or that we will remain in compliance with other regulatory requirements. If we, or manufacturers of our components, fail to comply with applicable FDA and other regulatory requirements, we, and they, are subject to sanctions, including:
  •  warning letters;
 
  •  fines;
 
  •  product recalls or seizures;
 
  •  injunctions;
 
  •  refusals to permit products to be imported into or exported out of the United States;
 
  •  withdrawals of previously approved marketing applications; and
 
  •  criminal prosecutions.
      Manufacturers of drugs also are required to comply with the applicable GMP requirements, which relate to product testing, quality assurance and maintaining records and documentation. We cannot assure you that we will be able to comply with the applicable GMP and other FDA regulatory requirements for manufacturing as we expand our manufacturing operations, which would impair our business.

34


Table of Contents

      In addition, to market our products in foreign jurisdictions, Aradigm and our partners must obtain required regulatory approvals from foreign regulatory agencies and comply with extensive regulations regarding safety and quality. We cannot assure you that we will obtain regulatory approvals in such jurisdictions or that we will not incur significant costs in obtaining or maintaining any foreign regulatory approvals. If approvals to market our products are delayed, if we fail to receive these approvals, or if we lose previously received approvals, our business would be impaired.
      Because certain of our clinical studies involve narcotics, we are registered with the DEA and our facilities are subject to inspection and DEA export, import, security and production quota requirements. We cannot assure you that we will not be required to incur significant costs to comply with DEA regulations in the future or that such regulations will not otherwise harm our business.
The results of preclinical and clinical testing are uncertain.
      Before we can file for regulatory approval for the commercial sale of our potential AERx and Intraject products, the FDA will require extensive preclinical and clinical testing to demonstrate their safety and efficacy. To date, we have tested prototype patient-operated versions of our AERx systems with morphine, insulin and dornase alfa on a limited number of individuals in Phase 1 and Phase 2 clinical trials and have initiated a Phase 3 clinical trial for our AERx insulin Diabetes Management System. If we do not or cannot complete these trials or progress to more advanced clinical trials, we may not be able to commercialize our AERx or Intraject products.
      Completing clinical trials in a timely manner depends on, among other factors, the enrollment of patients. Our ability to recruit patients depends on a number of factors, including the size of the patient population, the proximity of patients to clinical sites, the eligibility criteria for the study and the existence of competitive clinical trials. Delays in planned patient enrollment in our current or future clinical trials may result in increased costs, program delays or both.
      Although we believe the limited data we have regarding our potential products is encouraging, the results of initial preclinical and clinical testing do not necessarily predict the results that we will get from subsequent or more extensive preclinical and clinical testing. Furthermore, we cannot assure you that clinical trials of these products will demonstrate that these products are safe and effective to the extent necessary to obtain regulatory approvals. Many companies in the pharmaceutical and biotechnology industries have suffered significant setbacks in advanced clinical trials, even after promising results in earlier trials. If we cannot adequately demonstrate that any therapeutic product we are developing is safe and effective, regulatory approval of that product would be delayed or prevented, which would impair our business.
      We are also developing applications of our delivery platforms for the delivery of other compounds. These applications are in early stages of development and we do not yet know the degree of testing and development that will be needed to obtain necessary marketing approvals from the FDA and other regulatory agencies. We cannot assure you that these applications will prove to be viable or that any necessary regulatory approvals will be obtained in a timely manner, if at all.
      In addition, the FDA may require us to provide clinical data beyond what is currently planned to demonstrate that the chronic administration of drugs delivered via the lung for systemic effect is safe. We cannot assure you that we will be able to present such data in a timely manner, or at all.
We are in a highly competitive market and our competitors may develop alternative therapies.
      We are in competition with pharmaceutical, biotechnology and drug delivery companies, hospitals, research organizations, individual scientists and nonprofit organizations engaged in the development of alternative drug delivery systems or new drug research and testing, as well as with entities producing and developing injectable drugs. We are aware of a number of companies such as Alkermes Pharmaceuticals, Inc. and Nektar Therapeutics (formerly Inhale Therapeutic Systems, Inc.) that are currently seeking to develop new products and non-invasive alternatives to injectable drug delivery, including oral delivery systems, intranasal delivery systems, transdermal systems, buccal and colonic absorption systems. Several of these

35


Table of Contents

companies may have developed or are developing dry powder devices that could be used for pulmonary delivery. Many of these companies and entities have greater research and development capabilities, experience, manufacturing, marketing, financial and managerial resources than we do. Accordingly, our competitors may succeed in developing competing technologies, obtaining FDA approval for products or gaining market acceptance more rapidly than we can.
We depend on key personnel and must continue to attract and retain key employees.
      We depend on a small number of key management and technical personnel. Losing any of these key employees could harm our business and operations. Our success also depends on our ability to attract and retain additional highly qualified marketing, management, manufacturing, engineering and research and development personnel. We face intense competition in our recruiting activities and may not be able to attract or retain qualified personnel.
We may be exposed to product liability.
      Researching, developing and commercializing medical devices and therapeutic products entail significant product liability risks. The use of our products in clinical trials and the commercial sale of such products may expose us to liability claims. These claims might be made directly by consumers or by pharmaceutical companies or others selling such products.
      Companies often address the exposure of such risk by obtaining product liability insurance. Although we currently have product liability insurance, there can be no assurance that we can maintain such insurance or obtain additional insurance on acceptable terms, in amounts sufficient to protect our business, or at all. A successful claim brought against us in excess of our insurance coverage would have a material adverse effect on our business.
Third-party reimbursement for our products is uncertain.
      In both domestic and foreign markets, sales of our potential products depend in part on the availability of reimbursement from third-party payers such as government health administration authorities, private health insurers and other organizations. Third-party payers often challenge the price and cost-effectiveness of medical products and services. Significant uncertainty exists as to the reimbursement status of newly approved health care products. We cannot assure you that any of our products will be reimbursable by third-party payers. In addition, we cannot assure you that our products will be considered cost-effective or that adequate third-party reimbursement will be available to enable us to maintain price levels sufficient to realize a profit. Legislation and regulations affecting the pricing of pharmaceuticals may change before our products are approved for marketing and any such changes could further limit reimbursement.
We use hazardous materials.
      Our operations involve use of hazardous and toxic materials, chemicals and various radioactive compounds that generate hazardous, toxic and radioactive wastes. Although we believe that our safety procedures for handling and disposing of such materials comply with all state and federal regulations and standards, we cannot completely eliminate the risk of accidental contamination or injury from these materials. In the event of such an accident, we could be held liable for any damages that result and such liability could exceed the resources of our business.
Our stock price is likely to remain volatile.
      The market prices for securities of many companies in the drug delivery industry, including ours, have historically been highly volatile, and the market from time to time has experienced significant price and

36


Table of Contents

volume fluctuations unrelated to the operating performance of particular companies. Prices for our common stock may be influenced by many factors, including:
  •  investor perception of us;
 
  •  analyst recommendations;
 
  •  fluctuations in our operating results;
 
  •  market conditions relating to the drug delivery industry;
 
  •  announcements of technological innovations or new commercial products by us or our competitors;
 
  •  publicity regarding actual or potential developments relating to products under development by us or our competitors;
 
  •  failure to establish new collaborative relationships;
 
  •  developments or disputes concerning patent or proprietary rights;
 
  •  delays in the development or approval of our product candidates;
 
  •  regulatory developments in both the United States and foreign countries;
 
  •  public concern as to the safety of drug delivery technologies;
 
  •  period-to-period fluctuations in financial results;
 
  •  future sales of substantial amounts of common stock by shareholders; or
 
  •  economic and other external factors.
      In the past, class action securities litigation has often been instituted against companies following periods of volatility in the market price of their securities. Any such litigation instigated against us could result in substantial costs and a diversion of management’s attention and resources.
Nasdaq National Market.
      At various times during 2004, our common stock traded below $1.00. The Nasdaq has a $1.00 per share minimum bid requirement, pursuant to which our common stock could be de-listed from the Nasdaq National Market if it trades below $1.00 for 30 consecutive trading days and does not subsequently trade above $1.00 for 10 consecutive days. If we are unable to meet the Nasdaq requirements to maintain listing on the Nasdaq National Market our common stock could trade on the OTC Bulletin Board or in the “pink sheets” maintained by the National Quotation Bureau, Inc. Such alternatives are generally considered to be less efficient markets, and our stock price, as well as the liquidity of our common stock, will be adversely impacted as a result. Any reverse stock split we may implement in order to increase the price at which our common stock is traded may not raise such price in proportion to the magnitude of the reverse stock split.
We have implemented certain anti-takeover provisions.
      Certain provisions of our articles of incorporation and the California General Corporation Law could discourage a third party from acquiring, or make it more difficult for a third party to acquire, control of our company without approval of our board of directors. These provisions could also limit the price that certain investors might be willing to pay in the future for shares of our common stock. Certain provisions allow the board of directors to authorize the issuance of preferred stock with rights superior to those of the common stock. We are also subject to the provisions of Section 1203 of the California General Corporation Law which requires a fairness opinion to be provided to our shareholders in connection with their consideration of any proposed “interested party” reorganization transaction.
      We have adopted a shareholder rights plan, commonly known as a “poison pill”. The provisions described above, our poison pill and provisions of the California General Corporation Law may discourage, delay or prevent a third party from acquiring us.

37


Table of Contents

Item 7A. Quantitative and Qualitative Disclosure About Market Risk
Market Risk Disclosure
      In the normal course of business, our financial position is routinely subject to a variety of risks, including market risk associated with interest-rate movement. We regularly assess these risks and have established policies and business practices to protect against these and other exposures. As a result, we do not anticipate material potential losses in these areas.
      As of December 31, 2004 and 2003, we had cash, cash equivalents and short-term investments of $16.8 million and 29.8 million, respectively, consisting of cash and highly liquid, short-term investments. The market value of our short-term investments will decline by an immaterial amount if market interest rates increase, and therefore, our exposure to interest rate changes has been immaterial. Declines of interest rates over time will, however, reduce our interest income from our short-term investments. All capital lease obligations were paid in 2004.

38


Table of Contents

Item 8. Financial Statements and Supplementary Data
REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM
The Board of Directors and Shareholders of Aradigm Corporation
      We have audited the accompanying balance sheets of Aradigm Corporation as of December 31, 2004 and 2003, and the related statements of operations, redeemable convertible preferred stock and shareholders’ equity, and cash flows for each of the three years in the period ended December 31, 2004. These financial statements are the responsibility of the Company’s management. Our responsibility is to express an opinion on these financial statements based on our audits.
      We conducted our audits in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. We were not engaged to perform an audit of the Company’s internal control over financial reporting. Our audit included consideration of internal control over financial reporting as a basis for designing audit procedures that are appropriate in the circumstances, but not for the purpose of expressing an opinion on the effectiveness of the Company’s internal control over financial reporting. Accordingly we express no such opinion. An audit also includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements, assessing the accounting principles used and significant estimates made by management, and evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.
      In our opinion, the financial statements referred to above present fairly, in all material respects, the financial position of Aradigm Corporation at December 31, 2004 and 2003, and the results of its operations and its cash flows for each of the three years in the period ended December 31, 2004, in conformity with U.S. generally accepted accounting principles.
  /s/ Ernst & Young LLP
Palo Alto, California
February 11, 2005,
except for Note 11, as to which the date is
February 25, 2005

39


Table of Contents

ARADIGM CORPORATION
BALANCE SHEETS
                     
    December 31,
     
    2004   2003
         
    (In thousands, except
    shares data)
ASSETS
Current assets:
               
 
Cash and cash equivalents
  $ 14,308     $ 18,327  
 
Short-term investments
    2,455       11,443  
 
Receivables
    99       140  
 
Current portion of notes receivable from officers and employees
    67       104  
 
Prepaid and other current assets
    1,602       1,910  
             
   
Total current assets
    18,531       31,924  
Property and equipment, net
    60,555       62,612  
Noncurrent portion of notes receivable from officers and employees
    216       294  
Other assets
    439       388  
             
   
Total assets
  $ 79,741     $ 95,218  
             
 
LIABILITIES, REDEEMABLE CONVERTIBLE PREFERRED STOCK AND
SHAREHOLDERS’ EQUITY
Current liabilities:
               
 
Accounts payable
  $ 2,469     $ 885  
 
Accrued clinical and cost of other studies
    293       149  
 
Accrued compensation
    2,984       2,021  
 
Deferred revenue
    7,525       7,891  
 
Current portion of capital lease obligations
          427  
 
Other accrued liabilities
    1,138       843  
             
   
Total current liabilities
    14,409       12,216  
Noncurrent portion of deferred revenue
    3,966       5,040  
Noncurrent portion of deferred rent
    1,943       1,323  
Commitments and contingencies
               
Redeemable convertible preferred stock, no par value; 5,000,000 shares authorized; issued and outstanding shares: 1,544,626 in 2004 and 2003; liquidation preference of $37,380 in 2004 and 2003
    23,669       23,669  
Shareholders’ equity:
               
 
Common stock, no par value, 150,000,000 shares authorized; issued and outstanding shares: 72,295,730 in 2004; 62,751,196 in 2003
    281,387       268,406  
 
Accumulated other comprehensive loss
    (10 )     (2 )
 
Accumulated deficit
    (245,623 )     (215,434 )
             
   
Total shareholders’ equity
    35,754       52,970  
             
   
Total liabilities, redeemable convertible preferred stock and shareholders’ equity
  $ 79,741     $ 95,218  
             
See accompanying notes.

40


Table of Contents

ARADIGM CORPORATION
STATEMENTS OF OPERATIONS
                             
    Years Ended December 31,
     
    2004   2003   2002
             
    (In thousands, except per share data)
Contract and license revenues:
                       
 
Related parties
  $ 26,999     $ 33,546     $ 26,864  
 
Unrelated parties
    1,046       311       2,103  
                   
   
Total revenues
    28,045       33,857       28,967  
                   
 
Research and development
    46,477       49,636       54,680  
 
General and administrative
    11,934       10,391       10,394  
                   
   
Total expenses
    58,411       60,027       65,074  
                   
Loss from operations
    (30,366 )     (26,170 )     (36,107 )
Interest income
    194       338       818  
Interest expense
    (17 )     (138 )     (642 )
                   
Net loss
  $ (30,189 )   $ (25,970 )   $ (35,931 )
                   
Basic and diluted loss per share:
                       
Net loss
  $ (0.47 )   $ (0.52 )   $ (1.19 )
                   
Shares used in computing basic and diluted loss per share
    63,705       50,196       30,261  
                   
See accompanying notes.

41


Table of Contents

ARADIGM CORPORATION
STATEMENTS OF REDEEMABLE CONVERTIBLE PREFERRED STOCK AND
SHAREHOLDERS’ EQUITY
                                                                 
    Redeemable                        
    Convertible Preferred                    
    Stock   Common Stock       Accumulated       Total
            Deferred   Comprehensive   Accumulated   Shareholders’
    Shares   Amount   Shares   Amount   Compensation   Gain/Loss   Deficit   Equity
                                 
                (In thousands, except shares data)        
Balances at December 31, 2001
    2,001,236     $ 30,735       29,536,383     $ 224,738     $ (54 )   $ (2 )   $ (153,533 )   $ 71,149  
Issuance of common stock for cash, net of issuance costs of $79
                1,182,034       4,921                         4,921  
Issuance of common stock under the employee stock purchase plan
                431,695       1,157                         1,157  
Issuance of common stock upon exercise of stock options
                7,500       26                         26  
Issuance of options to purchase common stock for services
                      11                         11  
Issuance costs related to prior year’s sale of convertible preferred stock
          (70 )                                    
Amortization of deferred compensation
                            54                   54  
Comprehensive loss:
                                                               
Net loss
                                        (35,931 )     (35,931 )
Net change in unrealized loss on available-for sale-investments:
                                  23             23  
                                                 
Total comprehensive loss
                                                            (35,908 )
                                                 
Balances at December 31, 2002
    2,001,236       30,665       31,157,612       230,853             21       (189,464 )     41,410  
Issuance of common stock for cash, net of issuance costs of 7,353 including warrants valued at 5,657
                26,772,941       27,312                         27,312  
Issuance of common stock through conversion of Series A preferred stock
    (456,610 )     (6,996 )     1,826,440       6,996                         6,996  
Issuance of common stock under the employee stock purchase plan
                553,028       596                         596  
Issuance of common stock upon exercise of stock options
                27,125       11                         11  
Issuance of common stock upon exercise of warrants
                    2,414,050       2,522                               2,522  
Issuance of options and warrants to purchase common stock for services
                      116                         116  
Comprehensive loss:
                                                               
Net loss
                                        (25,970 )     (25,970 )

42


Table of Contents

                                                                 
    Redeemable                        
    Convertible Preferred                    
    Stock   Common Stock       Accumulated       Total
            Deferred   Comprehensive   Accumulated   Shareholders’
    Shares   Amount   Shares   Amount   Compensation   Gain/Loss   Deficit   Equity
                                 
                (In thousands, except shares data)        
Net change in unrealized loss on available-for sale-investments:
                                  (23 )           (23 )
                                                 
Total comprehensive loss
                                                            (25,993 )
                                                 
Balances at December 31, 2003
    1,544,626       23,669       62,751,196       268,406       0       (2 )     (215,434 )     52,970  
Issuance of common stock for cash, net of issuance costs of 817 including warrants valued at 2,278
                8,333,395       11,683                         11,683  
Issuance of common stock under the employee stock purchase plan
                839,731       911                         911  
Issuance of common stock upon exercise of stock options
                406       1                         1  
Issuance of common stock upon exercise of warrants
                371,002       304                         304  
Issuance of options and warrants to purchase common stock for services
                      82                         82  
Comprehensive loss:
                                                               
Net loss
                                        (30,189 )     (30,189 )
Net change in unrealized loss on available-for-sale investments
                                  (8 )           (8 )
                                                 
Total comprehensive loss
                                                            (30,197 )
                                                 
Balances at December 31, 2004
    1,544,626     $ 23,669       72,295,730     $ 281,387     $ 0     $ (10 )   $ (245,623 )   $ 35,754  
                                                 
See accompanying notes.

43


Table of Contents

ARADIGM CORPORATION
STATEMENTS OF CASH FLOWS
                             
    Years Ended December 31,
     
    2004   2003   2002
             
    (In thousands)
Cash flows from operating activities:
                       
Net loss
  $ (30,189 )   $ (25,970 )   $ (35,931 )
Adjustments to reconcile net loss to net cash used in operating activities:
                       
 
Depreciation and amortization
    3,813       5,983       5,749  
 
Reserve for obsolete capital assets
    544             114  
 
Issuance of warrants and common stock for services
    82       116       11  
 
Amortization of deferred compensation
                54  
 
Changes in operating assets and liabilities:
                       
   
Receivables
    41       142       1,067  
   
Prepaid and other current assets
    308       (454 )     (645 )
   
Other assets
    (51 )     21       121  
   
Accounts payable
    1,584       (1,066 )     (3,346 )
   
Accrued compensation
    963       (174 )     434  
   
Accrued liabilities
    439       294       (2,765 )
   
Deferred rent
    620       215       808  
   
Deferred revenue
    (1,440 )     (3,921 )     3,410  
                   
Net cash used in operating activities
    (23,286 )     (24,814 )     (30,919 )
                   
Cash flows from investing activities:
                       
Capital expenditures
    (2,300 )     (5,362 )     (11,157 )
Purchases of available-for-sale investments
    (6,376 )     (9,962 )     (12,105 )
Proceeds from sales and maturities of available-for-sale investments
    15,356       7,139       4,685  
                   
Net cash provided by (used) in investing activities
    6,680       (8,185 )     (18,577 )
                   
Cash flows from financing activities:
                       
Proceeds from issuance of common stock, net
    12,899       30,441       6,104  
Cash used in issuance of redeemable convertible preferred stock, net
                (70 )
Proceeds from payments on (cash used in issuance of) notes receivable with officers and employees
    115       (93 )      
Payments on capital lease obligations and equipment loans
    (427 )     (1,822 )     (3,703 )
                   
Net cash provided by financing activities
    12,587       28,526       2,331  
                   
Net decrease in cash and cash equivalents
    (4,019 )     (4,473 )     (47,165 )
Cash and cash equivalents at beginning of year
    18,327       22,800       69,965  
                   
Cash and cash equivalents at end of year
  $ 14,308     $ 18,327     $ 22,800  
Supplemental disclosure of cash flow information:
                       
 
Cash paid for interest
  $ 16     $ 126     $ 499  
                   
Non-cash investing and financing activities:
                       
 
Issuance of options and warrants to purchase common stock for services
  $ 82     $ 116     $ 11  
Issuance of common stock through conversion of Series A preferred stock
          6,996        
Issuance of warrants in conjunction with private placement of common stock
  $ 2,278     $ 5,657     $  
See accompanying notes.

44


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS
1. Summary of Significant Accounting Policies
Organization and Basis of Presentation
      Aradigm Corporation (the “Company”) is a California corporation engaged in the development and commercialization of non-invasive drug delivery systems. Principal activities to date have included obtaining financing, recruiting management and technical personnel, securing operating facilities, conducting research and development, and expanding commercial production capabilities. The Company does not anticipate receiving any revenue from the sale of products in the upcoming year. These factors indicate that the Company’s ability to continue its research, development and commercialization activities is dependent upon the ability of management to obtain additional financing as required. The Company operates as a sole operating segment.
Use of Estimates
      The preparation of financial statements in conformity with generally accepted accounting principles requires management to make estimates and assumptions that affect the amounts reported in the financial statements and accompanying notes. These estimates include useful lives for property and equipment and related depreciation calculations, estimated amortization period for payments received from product development and license agreements as they relate to the revenue recognition of deferred revenue and assumptions for valuing options, and warrants. Actual results could differ from these estimates.
Cash and Cash Equivalents
      The Company considers all highly liquid investments purchased with an original maturity of three months or less to be cash equivalents. The Company places its cash and cash equivalents in money market funds, commercial paper and corporate notes.
     Investments
      Management determines the appropriate classification of the Company’s marketable securities, which consist solely of debt securities, at the time of purchase and re-evaluates such designation at each balance sheet date. All marketable securities are classified as available-for-sale, carried at estimated fair value and reported in either cash equivalents or short-term investments. Unrealized gains and losses on available-for-sale securities are excluded from earnings and reported as a separate component of the statements of redeemable convertible preferred stock and shareholders’ equity until realized. Fair values of investments are based on quoted market prices where available. Interest income is recognized when earned and includes interest, dividends, amortization of purchase premiums and discounts, and realized gains and losses on sales of securities. The cost of securities sold is based on the specific identification method. The Company regularly reviews all of its investments for other-than-temporary declines in fair value. When we determine that the decline in fair value of an investment below our accounting basis is other-than-temporary, the Company reduces the carrying value of the securities held and records a loss in the amount of any such decline. No such reductions have been required during the past three years.
Notes Receivable
      Notes receivable are related to advances granted to employees for relocation. All amounts classified as current are due within 12 months. All amounts classified as long-term are due no later than April 2008. All balances are believed to be collectible and are stated at approximate fair value at December 31, 2004.

45


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
Depreciation and Amortization
      The Company records property and equipment at cost and calculates depreciation using the straight-line method over the estimated useful lives of the respective assets. Leasehold improvements are amortized over the shorter of the term of the lease or useful life of the improvement. Amortization expense for assets acquired under capital lease is included with depreciation expense.
      The estimated useful lives of property and equipment are as follows:
         
Machinery and equipment
    5 to 7 years  
Furniture and fixtures
    5 to 7 years  
Lab equipment
    5 to 7 years  
Computer equipment and software
    3 to 5 years  
Leasehold improvements
    5 to 17  years  
Long-Lived Assets
      In accordance with Statement of Financial Accounting Standards (“SFAS”) No. 144, “Accounting for the Impairment or Disposal of Long-Lived Assets,” the Company reviews for impairment whenever events or changes in circumstances indicate that the carrying amount of property and equipment may not be recoverable. Determination of recoverability is based on an estimate of undiscounted future cash flows resulting from the use of the asset and its eventual disposition. In the event that such cash flows are not expected to be sufficient to recover the carrying amount of the assets, the assets are written down to their estimated fair values and the loss is recognized on the Statements of Operations.
Revenue Recognition
      Contract revenues consist of revenue from collaboration agreements and feasibility studies (the “Agreements”). The Company recognizes its revenue under the provisions of the Securities and Exchange Commission issued Staff Accounting Bulletin No. 104 (“SAB 104”), “Revenue Recognition”. Under the Agreements, revenue is recognized at the lesser of actual earned reimbursements received or reimbursable costs incurred. Deferred revenue represents the portion of all refundable and nonrefundable research payments received that have not been earned. In accordance with contract terms, milestone payments from collaborative research agreements are considered reimbursements for costs incurred under the agreements and, accordingly, are generally recognized as revenue either upon the completion of the milestone effort when payments are contingent upon completion of the effort or are based on actual efforts expended over the remaining term of the agreements when payments precede the required efforts. Costs of contract revenues approximate such revenue and are included in research and development expenses. Refundable development and license fee payments are deferred until the specified performance criteria are achieved at which time they generally cease to be refundable.
Research and Development
      Research and development expenses consist of costs incurred for company-sponsored, collaborative and contracted research and development activities. These costs include direct and research-related overhead expenses. Research and development expenses under collaborative and government grants approximate the revenue recognized under such agreements. The Company expenses research and development costs as such costs are incurred.

46


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
Advertising
      Advertising costs are charged to sales and marketing expense as incurred and were immaterial in all periods presented.
Stock Based Compensation
      The Company has elected to follow Accounting Principles Board Opinion No. (“APB”) 25, “Accounting for Stock Issued to Employees”, and related interpretations in accounting for its employee stock options. Compensation expense is based on the difference, if any, between the fair value of the Company’s common stock and the exercise price of the option or share right on the measurement date, which is typically the date of grant. This amount is recorded as “Deferred stock compensation” in the Balance Sheets and amortized as a charge to operations over the vesting period of the applicable options or share rights. In accordance with SFAS 123, “Accounting for Stock-Based Compensation,” as amended by SFAS 148, “Accounting for Stock-Based Compensation — Transition and Disclosure,” the Company has provided, below, the pro forma disclosures of the effect on net loss and loss per share as if SFAS 123 had been applied in measuring compensation expense for all periods presented (in thousands, except per share data).
                           
    Years Ended December 31,
     
    2004   2003   2002
             
Net loss applicable to common shareholders — as reported
  $ (30,189 )   $ (25,970 )   $ (35,931 )
Add:
                       
 
Stock-based employee compensation expense included in reported net income
                54  
Less:
                       
 
Total stock-based employee compensation expense determined under fair value based method for all awards
    (4,585 )     (5,400 )     (7,455 )
                   
Pro forma net loss applicable to common shareholders
  $ (34,774 )   $ (31,370 )   $ (43,332 )
                   
Basic and diluted net loss per share applicable to common shareholders —
                       
 
As reported
  $ (0.47 )   $ (0.52 )   $ (1.19 )
 
Pro forma
  $ (0.55 )   $ (0.62 )   $ (1.43 )
Pro forma information regarding net loss and basic and diluted net loss per share is required by SFAS 123, which also requires that the information be determined as if the Company had accounted for its employee and non-employee director stock options granted using the fair value method prescribed by this statement. The fair value of options was estimated at the date of grant using the Black-Scholes option pricing model with the following assumptions: a risk-free interest rate of 3.1%, 2.5%, and 3.9% for the years ended December 31, 2004, 2003 and 2002, respectively; a dividend yield of 0.0%; the annual volatility factor of the expected market price of the Company’s common stock for 2004, 2003 and 2002 are 98.0%, 98.0%, and 87.0% respectively; and a weighted average expected option life of four years. The weighted average fair value of options granted during 2004, 2003 and 2002 with an exercise price equal to the fair value of the Company’s common stock on the date of grant was $1.10, $0.75 and $2.67, respectively. Additionally, the weighted average fair value of options granted during 2004 with an exercise price greater than the fair value of the Company’s common stock on the day of grant was $0.78.
      The Company accounts for options and warrants issued to non-employees under SFAS 123 and Emerging Issues Task Force Issue No. (EITF) 96-18, “Accounting for Equity Instruments that are Issued to Other than Employees for Acquiring, or in Conjunction with Selling, Goods or Services,” using the Black-Scholes option pricing model. The value of such non-employee options and warrants are periodically re-

47


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
measured over their vesting terms. The fair value of options and warrants was remeasured at period end using the Black-Scholes option pricing model with the following assumptions: a risk-free interest rate of 1.0% to 3.25%; using applicable U.S. Treasury rates; a dividend yield of 0.0%; the annual volatility factor of 88%; and a weighted average expected life based on the terms of the option grant or contractual term of the warrant of 1 to 3 years. Expense recognized related to options and warrants issued to non-employees was $82,000, $116,000, and $11,000 during the years ended December 31, 2004, 2003, and 2002, respectively.
Income Taxes
      The Company uses the liability method to account for income taxes as required by SFAS 109, “Accounting for Income Taxes”. Under this method, deferred income taxes reflect the net tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting purposes and the amounts used for income tax purposes.
Net Loss Per Share
      Net loss per share has been calculated under SFAS 128, “Earnings Per Share.” Basic net loss per share on a historical basis is computed using the weighted-average number of shares of common stock outstanding less the weighted-average number of shares subject to repurchase. There were no shares subject to repurchase in the years ended December 31, 2004, 2003 and 2002. No diluted loss per share information has been presented in the accompanying statements of operations since potential common shares from stock options, warrants and redeemable convertible preferred stocks are antidilutive. For the years ended December 31, 2004, 2003 and 2002, the total number of shares excluded from diluted loss per share relating to these securities was 12,832,271, 11,396,269, and 8,283,600 shares, respectively.
Significant Concentrations
      Financial instruments that potentially subject the Company to concentrations of credit risk consist primarily of cash, cash equivalents and short-term investments. Risks associated with these instruments are mitigated by banking with and only purchasing commercial paper from creditworthy institutions. The maximum amount of loss due to credit risk associated with these financial instruments is their respective fair values as stated in the Balance Sheet.
      Although the Company has had development arrangements with other collaborative partners, the arrangement with Novo Nordisk A/ S is its only active, funded development agreement. For the year ended December 31, 2004, this partner-funded program contributed approximately 96% of total contract revenues. The agreement with Novo Nordisk A/ S can be terminated under certain conditions, including by either party on limited written notice, by Novo Nordisk A/ S by limited prior written notice upon the occurrence of certain events, and by either party upon a thirty day written notice in the event that the other party commits a material breach under the agreement and fails to remedy such breach within the sixty days’ notice of such breach. Novo Nordisk A/ S, a publicly traded Danish company, is considered to be a related party due to its ownership interest in the Company. Novo Nordisk A/ S owned approximately 10% of the Company’s common stock on an as converted basis as of December 31, 2004.
Comprehensive Income (Loss)
      SFAS 130, “Reporting Comprehensive Income”, requires unrealized gains or losses on the Company’s available-for-sales securities to be recorded in other comprehensive income (loss). Total comprehensive loss has been disclosed in the statement of redeemable convertible preferred stock and shareholders’ equity.

48


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
Recent Accounting Pronouncements
      In December 2004, the Financial Accounting Standards Board, or FASB, issued a revision of Financial Accounting Standards No. 123, or SFAS 123R, which requires all share-based payments to employees, including grants of employee stock options, to be recognized in the income statement based on their values calculated under the fair value method, and eliminates the ability to account for these instruments under the intrinsic value method prescribed by APB Opinion No. 25, and allowed under the original provisions of SAFAS No. 123. We expect to calculate the value of share-based payments under SFAS 123R using the Black-Scholes model. The requirements of SFAS No. 123R are effective for fiscal periods beginning after June 15, 2005. We plan to adopt SFAS 123R in our fiscal quarter ending September 30, 2005. We expect the adoption of SFAS 123R will have a material impact on our financial statements in that fiscal quarter, but we cannot reasonably estimate the impact of adoption because we expect certain assumptions that can materially affect the calculation of the value share-based payments to employees to change in 2005.
      In March 2004, the FASB issued Emerging Issues Task Force Issue No 03-1, “The Meaning of Other-Than-Temporary Impairment and Its Application to Certain Investments”, or EITF 03-1, which provides new guidance for determining the meaning of other-than-temporary impairment and its application to investments classified as either available-for-sale or held-to-maturity under FASB Statement 115 (including individual securities and investments in mutual funds), and investments accounted for under the cost method or the equity method. Additionally, EITF 03-1 includes new disclosure requirements for investments that are deemed to be temporarily impaired. In September 2004, the FASB delayed the accounting provisions of EITF Issue No. 03-1; however, the disclosure requirements remain effective for annual financial statements for fiscal years ending after December 15, 2003. Our adoption of the disclosure provisions of EITF Issue No. 03-1 did not have any material effect on our financial position, results of operations, or cash flows. We will evaluate the effect, if any, of EITF Issue No. 03-1 when final guidance is released.
Reclassifications
      Certain reclassifications of prior year amounts have been made to conform to current-year presentation. The reclassification is related to the separate disclosure of accumulated other comprehensive loss in the Balance Sheets and the Statements Of Redeemable Convertible Preferred Stock And Shareholders’ Equity.
2. Financial Instruments
Cash Equivalents and Investments
      The following summarizes the Company’s fair value of cash equivalents and investments (amounts in thousands):
                   
    December 31,
     
    2004   2003
         
Cash equivalents:
               
 
Money market fund
  $ 800     $ 604  
 
Commercial paper
    13,508       17,723  
             
    $ 14,308     $ 18,327  
             
Short-term investments:
               
 
Commercial paper
  $       5,522  
 
Corporate and Government notes
    2,455     $ 5,921  
             
    $ 2,455     $ 11,443  
             

49


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
                   
    December 31,
     
    2004   2003
         
Short-Term investments:
               
Investments maturing in 90 days to less than 1 year:
               
 
Commercial paper
  $     $ 5,522  
 
Corporate notes
    1,016       1,017  
 
Foreign debt securities
          337  
 
US government agencies
    1,439       2,080  
             
 
Total maturing in less than 1 year
  $ 2,455     $ 8,956  
             
Investments maturing in 1 to 2 years:
               
 
Corporate notes
  $       1,507  
 
US government agencies
          980  
             
 
Total maturing in 1 to 2 years
          2,487  
             
 
Total short term investments
  $ 2,455     $ 11,443  
             
      As of December 31, 2004 and 2003, the difference between the fair value and the amortized cost of available-for-sale securities was $10,000 loss and $2,000 loss respectively. The individual gross unrealized gains and individual gross unrealized losses for 2004 and 2003 were immaterial. Realized gains and losses on sales of available-for-sale investments during the years ended December 31, 2004 and 2003 were insignificant.
3. Property and Equipment
      Property and equipment consist of the following (amounts in thousands):
                 
    December 31,
     
    2004   2003
         
Machinery and equipment
  $ 14,364     $ 18,336  
Furniture and fixtures
    1,917       1,903  
Lab equipment
    4,086       4,050  
Computer equipment and software
    6,256       6,068  
Leasehold improvements
    12,225       12,176  
             
Fixed Assets at Cost
    38,848       42,533  
Less accumulated depreciation and amortization
    (27,740 )     (23,927 )
             
Net Depreciable Assets
    11,108       18,606  
Construction in progress
    49,447       44,006  
             
Property and equipment, net
  $ 60,555     $ 62,612  
             
      At December 31, 2004 no property and equipment included assets under capitalized leases. At December 31, 2003 property and equipment include assets under capitalized leases was approximately $2,068,000. Accumulated depreciation related to leased assets at December 31, 2003 was approximately $1,534,000. As of January 26, 2005 the Company sold certain equipment, leasehold improvements and other tangible assets. See Note 11, Subsequent Event.

50


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
4. Leases, Commitments and Contingencies
      The Company leases its office, laboratory and manufacturing facilities under several operating leases expiring through the year 2016. Future minimum lease payments under non-cancelable operating at December 31, 2004 are as follows (amounts in thousands):
           
    Operating
    Leases
     
Years ending December 31:
       
2005
  $ 5,131  
2006
    4,434  
2007
    4,932  
2008
    5,091  
2009
    5,134  
2010 and thereafter
    28,667  
       
 
Total minimum lease payments
  $ 53,389  
       
      Certain of the Company’s operating leases have rent escalation clauses and accordingly, the Company recognizes rent expense on a straight-line basis. At December 31, 2004 and 2003, the Company had $1.9 million and $1.3 million of deferred rent, respectively.
      For the years ended December 31, 2004, 2003 and 2002, rent expense under operating leases totaled $5.5 million, $5.4 million, and $5.9 million respectively.
      At December 31, 2004, the Company had contractual non-cancelable purchase commitments of $1.9 million related to capital equipment purchases of $1.6 million and $300,000 for services.
      As of January 26, 2005 certain operating leases were assigned to Novo Nordisk in accordance with the restructuring transaction. See Note 11, Subsequent Event.
Indemnification
      The Company from time to time enters into contracts that contingently require the Company to indemnify parties against third party claims. These contracts primarily relate to: (i) real estate leases, under which the Company may be required to indemnify property owners for environmental and other liabilities, and other claims arising from the Company’s use of the applicable premises, and (ii) agreements with the Company’s officers, directors and employees, under which the Company may be required to indemnify such persons from certain liabilities arising out of such persons’ relationships with the company. To date, the Company has made no payments related to such indemnifications and no liabilities have been recorded for these obligations on the balance sheets as of December 31, 2004 or 2003.
Legal Matters
      From time to time, the Company is involved in litigation arising out of the ordinary course of its business. There are no known claims or pending litigation expected to have a material effect on the Company’s overall financial position, results of operations, or liquidity.
5. Redeemable Convertible Preferred Stock and Common Stock Warrants
      The Company completed a $48.4 million preferred stock financing in December 2001. Under the terms of the financing the Company sold to a group of investors 2,001,236 shares of Series A redeemable convertible preferred stock (“preferred stock”) at a purchase price of $24.20 per share. Each share of preferred stock,

51


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
together with accrued and unpaid dividends, is convertible at the option of the holder into four shares of common stock. The Company also issued warrants to the investors to purchase 5,203,212 shares of common stock at an exercise price of $6.97 per share. Issuance costs of approximately $3.0 million were accounted for as a reduction to proceeds from the preferred stock financing. The warrants are exercisable for a four-year period ending in 2006.
      In March, June and July 2003, certain holders of shares of the Company’s preferred stock elected to convert an aggregate of 456,610 shares of preferred stock to common stock. The Company issued 1,826,440 shares of common stock in connection with the conversion.
      Holders of preferred stock are entitled to cumulative dividends, which shall accrue at an annual rate of 6%, payable only when and if declared by the Board of Directors. At the option of the Company, dividends may be paid in either cash or in shares of common stock, which will be valued at a price equal to the then current market price. The current market price of the common stock on any dividend payment date shall be based on the closing price of the Company’s common stock as quoted on the Nasdaq Stock Market. There were no dividends declared as of December 31, 2004 or 2003.
      The conversion rate of the preferred stock is fixed and not subject to any adjustments except for stock splits, stock dividends, combinations, reorganizations, mergers or other similar events. Each share of outstanding preferred stock will automatically convert into common stock upon either the closing of a registered underwritten public offering covering the offer and sale of common stock with gross proceeds to the Company exceeding $25 million or the date on which the common stock closing bid price has been above $10.59 per share for at least twenty consecutive trading days.
      Upon any liquidation, dissolution, redemption or winding up of the Company, whether voluntary or involuntary, the holders of outstanding preferred stock will be entitled to a liquidation preference, equal to the original issue price plus all accrued and unpaid dividends (as adjusted for any stock dividends, combinations, splits, recapitalizations and other similar events) to the holders of preferred stock. Any remaining assets will be available for distribution to holders of common stock.
      Each holder of preferred stock shall have a number of votes equal to the number of shares of common stock issuable upon conversion of such holder’s shares of preferred stock and shall have voting rights and powers equal to the voting rights and powers of the Company’s common stock. At December 31, 2004 the total liquidation preference of all outstanding preferred stock was approximately $37,380,000.
Summary of Preferred Stock and Warrant Accounting
      The net proceeds of the preferred stock offering were reduced by approximately $14.7 million, representing the value assigned to the common stock warrants issued with the preferred stock. The warrants were valued using the Black-Scholes option pricing model with the following assumptions: estimated volatility of 87%, risk-free interest rate of 4.71%, no dividend yield, and an expected life of 5 years. After reducing the $48.4 million proceeds by the value of the warrants, the remaining proceeds were used to compute a discounted conversion price in accordance with EITF 00-27, “Application of EITF Issue No. 98-5, Accounting for Convertible Securities with Beneficial Conversion Features or Contingently Adjustable Conversion Ratios to Certain Convertible Instruments.” The discounted conversion price is compared to the fair market value of the Company’s common stock on the issuance date of the preferred stock resulting in a beneficial conversion feature of approximately $10.7 million, which represents the difference between the fair market value of the Company’s common stock and the discounted conversion price. The value of the beneficial conversion feature was reported on the Statements of Operations for the year ended December 31, 2001 as a deemed dividend and was included in the calculation of net loss applicable to the common shareholders.

52


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
      The preferred stock agreement provides that a mandatory redemption is triggered if a change in control occurs. Accordingly, in accordance with EITF D-98, “Classification and Measurement of Redeemable Securities,” which clarifies Rule #5-02.28 of Regulation S-X previously adopted in accounting series Release No. 268, “Presentation in Financial Statements of Redeemable Preferred Stock,” the Company has classified the preferred stock outside of permanent equity.
6. Shareholders’ Equity
      In a private placement in December 2004, the Company issued 8,333,395 shares of common stock at a price of $1.50 per share and warrants to purchase 2,083,347 shares of common stock at $2.10 per share, for aggregate consideration of approximately $12.5 million. The warrants are exercisable at the election of the warrant holders for a four-year term. The Company valued the warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 88%, risk-free interest rate of 3.6%, no dividend yield, and an expected life of four years, and recorded approximately $2,278,428 as issuance costs related to the private placement. These warrants are exercisable through December 2008.
      In November 2003 the Company issued 7,780,550 shares of common stock at $1.80 per share and warrants to purchase 1,945,133 shares of common stock at $2.50 per share to certain investors for an aggregate purchase price of approximately $14.0 million in a private placement. The warrants are exercisable at the election of the warrant holders for a four-year term. The Company valued the warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 88%, risk-free interest rate of 2.5%, no dividend yield, and an expected life of four years, and recorded approximately $2,647,511 as issuance costs related to the private placement. These warrants are exercisable through November 2007.
      In March 2003, the Company issued 18,992,391 shares of common stock at $0.79 per share and warrants to purchase 4,273,272 shares of the common stock at $1.07 per share to certain investors for an aggregate purchase price of approximately $15.0 million in a private placement. The warrants are exercisable at the election of the warrant holders for a four-year term. The Company valued the warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 84%, risk-free interest rate of 2.5%, no dividend yield, and an expected life of four years, and recorded approximately $1,882,733 as issuance costs related to the private placement. In addition, in connection with this private placement, the Company issued warrants (“replacement warrants”) to purchase an aggregate of 4,016,024 shares of its common stock at $1.12 per share to certain of the investors in the private placement in exchange for the cancellation of an equal number of warrants to purchase shares of the common stock at $6.97 per share, held by the same investors. The Company valued the replacement warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 84%, risk-free interest rate of 2.5%, no dividend yield, and an expected life of 3.8 years, and recorded an additional $1,126,855 as issuance costs related to the private placement. These warrants are exercisable through March 2007.
      In July 2002, the Company raised $5 million through the sale of 1,182,034 shares of common stock at a price of $4.23 per share to Novo Nordisk Pharmaceuticals, Inc. (“Novo Nordisk Pharmaceuticals”), an affiliate of Novo Nordisk A/ S. This sale was made under the terms of the Stock Purchase Agreement entered into in October 2001 with Novo Nordisk Pharmaceuticals.
      In June 2004, the Company filed a Certificate of Amendment to the Company’s amended and restated Articles of Incorporation with the Secretary of State of the State of California to increase the Company’s authorized number of shares of common stock from 100,000,000 to 150,000,000 shares. The additional shares of common stock authorized by the amendment have rights identical to the common stock of the Company outstanding immediately before the filing of the amendment. Issuances of common stock from the additional authorized shares do not affect the rights of the holders of the Company’s common stock and preferred stock outstanding immediately before the filing of the amendment, except for effects that may be incidental to increasing the number of shares of the Company’s common stock outstanding, such as dilution of the earnings per share and voting rights of holders of other common stock.

53


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
Reserved Shares
      At December 31, 2004, the Company had 11,072,760 shares of its common stock reserved for issuance upon exercise of common stock warrants, 13,295,808 shares reserved for issuance upon exercise of options under all plans, 6,178,504 shares reserved for issuance upon conversion of preferred stock and 730,455 available authorized shares under the Employee Stock Purchase Plan.
Other Common Stock Warrants
      During 2004 the Company received net proceeds of approximately $304,000 and issued an aggregate of 371,002 shares of common stock in connection with the exercise of warrants.
      During 2004, the Company amended the payment terms of the operating lease for its primary offices. In consideration for the amended lease agreement, Aradigm replaced common stock warrants to purchase 135,000 shares of common stock at $10.16 — $21.72 per share with new common stock warrants with an exercise price equal to $1.71 per share. The $88,000 incremental fair value of the replacement warrants, as defined as the fair value of the new warrant less the fair value of the old warrant on date of replacement, is being amortized to operating expenses on a straight-line basis over the remaining life of the lease. The fair value of the warrants was measured using the Black-Scholes option pricing model with the following assumptions: risk-free interest rates between 1.3% and 2.4%; a dividend yield of 0.0%; annual volatility factor of 88%; and a weighted average expected life based on the terms on the contractual term of the warrants from 1 to 3.5 years.
      During 2003 the Company received net proceeds of approximately $2.5 million and issued an aggregate of 2,414,050 shares of common stock in connection with the exercise of warrants.
      In March 2003, the Company issued warrants in connection with a financial relations service agreement that entitles the holder to purchase 25,000 shares of common stock which are exercisable at $1.31 per share and vests over the 48 month service period of which 4,688 shares vested during the year ended December 31, 2003. In 2004, the Company terminated the financial service relationship and accelerated the vesting schedule for all remaining 20,312 shares. The Company valued the warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 88%, risk-free interest rate of 2.0%, no dividend yield, and an expected life of four years. The fair value of these warrants is re-measured as the underlying warrants vest and is being expensed over the vesting period of the warrants. For the year ended December 31, 2004 the Company recorded $22,000 of expense in connection with these warrants. These warrants are exercisable through March 2008.
      In October 2002, the Company issued warrants in connection with a financial relations service agreement that entitles the holder to purchase 75,000 shares of common stock, 25,000 of which are exercisable at $1.99 per share, 25,000 shares of which are exercisable at $2.39 per share and 25,000 shares of which are exercisable at $2.79 per share. At the execution of the agreement 15,000 shares immediately vested and the remaining shares shall vest based on the achievement of various performance benchmarks set forth in the agreement: all benchmarks were achieved as of March 2004. The Company valued the warrants using the Black-Scholes option pricing model using the following assumptions: estimated volatility of 88%, risk-free interest rate of 2.0%, no dividend yield, and an expected life of four years. The fair value of these warrants is re-measured as the underlying warrants vest and is being expensed over the vesting period of the warrants. For the year ended December 31, 2003 the Company recognized $77,000 of expense associated with these warrants. In the year ended December 31, 2004, due to all benchmarks being achieved during the year, the Company reversed previously recognized expense of $48,000. The warrants are exercisable through October 2007.

54


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
1996 Equity Incentive Plan and 1996 Non-Employee Directors’ Plan
      In April 1996, the Company’s Board of Directors adopted and the Company’s shareholders approved the 1996 Equity Incentive Plan (the “Plan”), which amended and restated the 1992 Stock Option Plan. The original plan reserved 4.8 million shares for future authorization. In May 2003, the Board approved an amendment to the 1996 Plan, to increase the maximum number of shares available for issuance under the evergreen feature of the 1996 Plan by 2.0 million shares to 10.0 million. The aggregate reserved for authorization is 14.8 million. As of December 31, 2004, the Company had 14,593,193 shares of common stock authorized for issuance under the Plan. Options granted under the Plan expire no later than 10 years from the date of grant. Options granted under the Plan may be either incentive or non-statutory stock options. For incentive and non-statutory stock option grants, the option price shall be at least 100% and 85%, respectively, of the fair value on the date of grant, as determined by the Board of Directors. If at any time the Company grants an option, and the optionee directly or by attribution owns stock possessing more than 10% of the total combined voting power of all classes of stock of the Company, the option price shall be at least 110% of the fair value and shall not be exercisable more than five years after the date of grant. During May 2001, the Company’s shareholders approved an amendment to the Plan to include an evergreen provision. The evergreen provision will automatically increase the number of shares reserved under the Plan, subject to certain limitations, by 6% of the issued and outstanding Common Stock of the Company or such lesser number of shares as determined by the Board of Directors on the date of the annual meeting of shareholders of each fiscal year beginning 2001 and ending 2005.
      Options granted under the 1996 Equity Incentive Plan may be immediately exercisable based on the specific grant as defined by the Board of Directors and, if exercised early may be subject to repurchase provisions. The shares acquired generally vest over a period of four years from the date of grant. The Plan also provides for a transition from employee to consultant status without termination of the vesting period as a result of such transition. Under the Plan, employees may exercise options in exchange for a note payable to the Company. As of December 31, 2004 and 2003, there were no outstanding notes receivable from shareholders. Any unvested stock issued is subject to repurchase agreements whereby the Company has the option to repurchase unvested shares upon termination of employment at the original issue price. The common stock has voting rights but does not have resale rights prior to vesting. The Company has repurchased a total of 38,294 shares in accordance with these agreements through December 31, 1998. Subsequently, no grants with early exercise provision have been granted under the 1996 Equity Incentive Plan and no shares have been repurchased. During 2004, the Company granted options to purchase 3,488,800 shares of common stock under the 1996 Equity Incentive Plan, none of which included an early exercise provision.
      The 1996 Non-Employee Directors’ Stock Option Plan (the “Directors’ Plan”) had 225,000 shares of common stock authorized for issuance. Options granted under the Directors’ Plan expire no later than 10 years from date of grant. The option price shall be at 100% of the fair value on the date of grant as determined by the Board of Directors. The options generally vest quarterly over a period of one year. During 2000, the Board of Directors approved the termination of the Directors’ Plan. No more options can be granted under the plan after its termination. The termination of the Directors’ Plan will have no effect on the options already outstanding. There was no activity in the Directors’ Plan during the year ended December 31 2004 and as of December 31, 2004, 105,924 outstanding options with exercise prices ranging from $8.25 — $24.13 remained with no additional shares available for grant.

55


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
      The following is a summary of activity under the Equity Incentive Plan and the Directors’ Plan:
                                   
    Options Outstanding
     
    Shares Available for   Number of       Weighted Average
    Grant of Options   Shares   Price Per Share   Exercise Price
                 
Balance at December 31, 2001
    496,010       4,217,448     $ 0.33–$24.13     $ 9.94  
 
Options authorized
    1,783,393                    
 
Options granted
    (2,149,280 )     2,149,280     $ 1.42–$4.82     $ 4.20  
 
Options exercised
          (7,500 )   $ 3.44     $ 3.44  
 
Options cancelled
    457,970       (480,470 )   $ 1.42–$23.00     $ 7.81  
                         
Balance at December 31, 2002
    588,093       5,878,758     $ 0.33–$24.13     $ 8.05  
 
Options authorized
    3,042,618                    
 
Options granted
    (1,812,750 )     1,812,750     $ 0.91–$2.16     $ 1.29  
 
Options exercised
          (27,125 )   $ 0.33–$0.95     $ 0.42  
 
Options cancelled
    1,180,557       (1,180,557 )   $ 0.95–$23.38     $ 7.83  
                         
Balance at December 31, 2003
    2,998,518       6,483,826     $ 0.37–$24.13     $ 6.23  
 
Options authorized
    3,813,870                    
 
Options granted
    (3,488,800 )     3,488,800     $ 0.76–$2.40     $ 1.55  
 
Options exercised
          (406 )   $ 0.95–$1.42     $ 1.24  
 
Options cancelled
    556,372       (556,372 )   $ 0.37–$23.57     $ 6.32  
                         
Balance at December 31, 2004
    3,879,960       9,415,848     $ 0.43–$24.13     $ 4.44  
                         
                                                 
    Options Outstanding   Options Exercisable
         
        Weighted    
        Weighted   Average       Weighted   Weighted Average
        Average   Remaining       Average   Remaining
        Exercise   Contractual       Exercise   Contractual Life
Exercise Price Range   Number   Price   Life (in years)   Number   Price   (in years)
                         
$0.43 – $0.57
    11,499     $ 0.50       0.9       11,499     $ .50       0.9  
$0.76 – $1.10
    2,553,600     $ 1.01       9.0       528,142     $ .98       8.4  
$1.15 – $1.72
    839,456     $ 1.27       9.2       200,984     $ 1.36       8.4  
$1.80 – $2.60
    1,856,300     $ 2.30       8.9       264,668     $ 2.19       8.2  
$3.34 – $4.88
    2,027,810     $ 4.22       7.1       1,528,458     $ 4.20       7.1  
$5.11 – $7.52
    700,197     $ 6.12       5.7       662,146     $ 6.13       5.6  
$8.25 – $12.25
    683,943     $ 10.76       3.5       691,056     $ 10.76       3.5  
$12.44 – $17.63
    421,988     $ 15.54       5.0       424,925     $ 15.52       5.0  
$18.75 – $24.13
    321,055     $ 22.24       5.4       321,056     $ 22.24       5.4  
                                     
      9,415,848     $ 4.44       7.6       4,632,934     $ 7.13       6.3  
                                     
      The Company recorded deferred compensation of approximately $704,000 for the difference between the grant price and the fair value of certain of the Company’s common stock options granted in 1998. There were no such grants in 2004, 2003 and 2002. Amortization of deferred compensation recognized in the years ended December 31, 2002 was approximately $54,000. Deferred compensation was fully amortized as of December 31, 2002.

56


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
Employee Stock Purchase Plan
      Employees generally are eligible to participate in the Purchase Plan if they have been continuously employed by the Company for at least 10 days prior to the first day of the offering period and are customarily employed at least 20 hours per week and at least five months per calendar year and are not a 5% or greater stockholder. Shares may be purchased under the Purchase Plan at 85% of the lesser of the fair market value of the common stock on the grant date or purchase date. Employee contributions, through payroll deductions, are limited to the lesser of fifteen percent of earnings or $25,000.
      As of December 31, 2004 a total of 2,519,545 shares have been issued under the Purchase Plan, leaving a balance of 730,455 available authorized shares. Under SFAS No. 123, pro forma compensation cost is reported for the fair value of the employees’ purchase rights, which was estimated using the Black-Scholes model and the following assumptions for 2004; expected volatility of 110.0%; risk-free interest rates of 1.2%; an average expected life of one year and a dividend yield of 0.0%. The weighted-average fair value of the purchase rights granted was $0.58 per share in 2004. Pro-forma compensation expense of $623,000, $245,000, and $667,000 for the years ended December 31, 2004, 2003, and 2002 respectively, associated with shares granted under the Employee Stock Purchase Plan has been included in the disclosure entitled Stock Based Compensation in Note 1.
7. Employee Benefit Plans
      The Company has a 401(k) Plan which stipulates that all full-time employees with at least 30-days of employment can elect to contribute to the 401(k) Plan, subject to certain limitations, up to $13,000 annually on a pretax basis. Subject to a maximum dollar match contribution of $6,500 per year, the Company will match 50% of the first 6% of the employee’s contribution on a pretax basis. The Company expensed total employer matching contributions of $461,000, $483,000, and $527,000 in 2004, 2003 and 2002, respectively.
8. Collaborative Agreements
Novo Nordisk A/ S
      In June 1998, the Company executed a development and commercialization agreement with Novo Nordisk A/ S to jointly develop a pulmonary delivery system for administering insulin by inhalation. In addition, the agreement provides Novo Nordisk A/ S with an option to develop the technology for delivery of other compounds. Under the terms of the agreement, Novo Nordisk A/ S has been granted exclusive rights to worldwide sales and marketing rights for any products developed under the terms of the agreement.
      Through December 31, 2004, the Company received from Novo Nordisk A/ S approximately $154.1 million in product development and milestone payments and, of this amount, the Company has recognized approximately $142.8 million as contract revenue and $11.3 million has yet to be recognized over the life of the project.
      In 1998, the Company raised $5.0 million through the sale of common stock to Novo Nordisk A/ S at a 25% premium to the fair market price. In June 2001, the Company raised an additional $5 million through the sale of common stock to Novo Nordisk A/ S at the fair market price. In October 2001, the Company entered into a new common stock purchase agreement with Novo Nordisk Pharmaceuticals. Under the new agreement, Novo Nordisk Pharmaceuticals committed to purchase up to $45 million of the Company’s common stock at fair market value specified in the agreement, of which $20 million was invested initially. In July 2002, the Company raised $5 million through the sale of common stock to Novo Nordisk Pharmaceuticals under the terms of the agreement. Under the terms of the development agreement in place between the Company and Novo Nordisk before completion of the restructuring transaction, Novo Nordisk A/ S will funded all product development costs incurred by the Company under the terms of the agreement, while Novo Nordisk A/ S and the Company agreed to co-fund final development of the AERx device. The Company was

57


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
to be the initial manufacturer of all the products covered by the agreement and was to receive a share of the overall gross profits resulting from Novo Nordisk A/ S’s sales of the products. For the years ended December 31, 2004, 2003 and 2002, the Company recognized contract revenues of $27.0 million, $33.5 million, and $26.9 million, respectively.
      As of January 26, 2005 the agreement with Novo Nordisk was amended. See Note 11, Subsequent Event.
      The Company receives revenue from other partner-funded programs. These programs are generally early-stage feasibility programs and may not necessarily develop into long-term development agreements with the partners.
      Significant partner payments, contract and milestone revenues and deferred revenue are as follows (amounts in thousands):
                         
    December 31,
     
    2004   2003   2002
             
Deferred revenue — beginning balance
  $ 12,931     $ 16,852     $ 13,442  
Partner payments:
                       
Novo Nordisk A/ S
    25,373       29,625       30,794  
Other partner-funded programs
    1,232       311       1,583  
                   
Total partner payments
    26,605       29,936       32,377  
                   
Contract revenue recognized:
                       
Novo Nordisk A/ S
    26,999       33,546       26,864  
Other partner-funded programs
    1,046       311       2,103  
                   
Total contract revenue recognized
    28,045       33,857       28,967  
                   
Deferred revenue — ending balance
    11,491       12,931       16,852  
Less: Noncurrent portion of deferred revenue
    (3,966 )     (5,040 )     (6,170 )
                   
Current portion of deferred revenue
  $ 7,525     $ 7,891     $ 10,682  
                   
      As a result of the restructuring transaction, our contract revenue from the Company’s development agreement with Novo Nordisk will cease in 2005. Of the amount currently recorded in deferred revenue the Company will record $11.3 million in the first quarter of 2005 as: project development revenue of $2.1 million, deferred milestone revenue of $5.2, and $4.0 million partial payment for the sale of the insulin development program assets in accordance with the restructuring agreement. See Note 11, Subsequent Event.
9. Related Party Transactions
      Novo Nordisk A/ S and its affiliate, Novo Nordisk Pharmaceuticals, Inc., are considered related parties and at December 31, 2004 own approximately 10% of the Company’s total outstanding common stock (on an as-converted basis).
Development and License Agreement
      In June 1998, the Company executed a development and commercialization agreement with Novo Nordisk A/ S to jointly develop a pulmonary delivery system for administering insulin by inhalation. Under the terms of the agreement, Novo Nordisk A/ S has been granted exclusive rights to worldwide sales and marketing rights for any products developed under the terms of the agreement. Through December 31, 2004, the Company received from Novo Nordisk A/ S approximately $154.1 million in product development and milestone payments and, of this amount, the Company has recognized approximately $142.8 million as

58


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
contract revenue. Novo Nordisk A/ S will fund all product development costs incurred by the Company under the terms of the agreement, while Novo Nordisk A/ S and the Company will co-fund final development of the AERx device. Under its agreements with Novo Nordisk in effect at December 31, 2004, the Company was to have been the initial manufacturer of all the products covered by the agreement and will receive a share of the overall gross profits resulting from Novo Nordisk A/ S’s sales of the products. For the years ended December 31, 2004, 2003 and 2002, the Company recognized contract revenues of $27.0 million, $33.5 million and $26.9 million, respectively. No amounts were due to the Company from Novo Nordisk A/ S at December 31, 2004 and 2003.
      As of January 26, 2005 the development and license agreement with Novo Nordisk was amended. See Note 11, Subsequent Event.
Securities Purchase Agreements
      In 1998, the Company raised $5.0 million through the sale of common stock to Novo Nordisk A/ S at a 25% premium to the fair market price. In June 2001, the Company raised an additional $5 million through the sale of common stock to Novo Nordisk A/ S at the fair market price. In October 2001, the Company entered into a new common stock purchase agreement with Novo Nordisk Pharmaceuticals. Under the new agreement, Novo Nordisk Pharmaceuticals committed to purchase up to $45 million of the Company’s common stock at fair market value specified in the agreement, of which $20 million was invested initially. In July 2002, the Company raised $5 million through the sale of common stock to Novo Nordisk Pharmaceuticals under the terms of the agreement. Since the inception of the collaboration in June 1998 through December 31, 2004, the Company raised $35 million through the sale of common stock to Novo Nordisk A/S.
      As of January 26, 2005 the stock purchase agreement with Novo Nordisk was amended. See Note 11, Subsequent Event.
10. Income Taxes
      There is no provision for income taxes because the Company has incurred operating losses. Deferred income taxes reflect the net tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting and the amounts used for tax purposes.
      Significant components of the Company’s deferred tax assets are as follows (amounts in thousands):
                 
    December 31,
     
    2004   2003
         
Net operating loss carryforward
  $ 73,900     $ 58,900  
Deferred revenue
    4,600       5,200  
Research and development credits
    14,400       11,900  
Capitalized research and development
    7,100       11,400  
Other
    1,800       1,200  
             
Total deferred tax assets
    101,800       88,600  
Valuation allowance
    (101,800 )     (88,600 )
             
Net deferred tax assets
  $     $  
             
      Realization of deferred tax assets is dependent upon future earnings, if any, the timing and amount of which are uncertain. Accordingly, the net deferred tax assets have been fully offset by a valuation allowance. The valuation allowance increased by $13,200,000 in 2004 and $14,600,000 in 2003.

59


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
      As of December 31, 2004, the Company had net operating loss carryforwards for federal income-tax purposes of approximately $195,000,000, which expire in the years 2006 through 2024, and federal research and development tax credits of approximately $9,800,000, which expire in the years 2006 through 2024. As of December 31, 2004, the Company had net operating loss carryforwards for California income tax purposes of approximately $61,700,000, which expire in the years 2005 through 2014, and California research and development tax credits of approximately $5,800,000, which do not expire and California Manufacturer’s Investment Credit of approximately $1,100,000, which expire in the years 2005 through 2013.
      The use of the Company’s net operating losses and credit carryforwards may be subject to substantial annual limitation due to ownership change limitations provided by the Internal revenue Code and similar California provisions. Such an annual limitation could result in the expiration of the net operating losses and credits before utilization.
11. Subsequent Event
      As of January 26, 2005, the Company completed the restructuring of its AERx iDMS program, pursuant to the Restructuring Agreement entered into with Novo Nordisk A/ S and Novo Nordisk Delivery Technologies, Inc. as of September 28, 2004. Under the terms of the Restructuring Agreement the Company sold certain equipment, leasehold improvements and other tangible assets currently utilized in the AERx iDMS program to Novo Nordisk Delivery Technologies, for a cash payment of approximately $55.3 million, in which the Company received net proceeds of $51.3 million after applying approximately $4.0 million of cost advances previously made by Novo Nordisk. Our expenses related to this transaction for legal and other consulting costs were approximately $1.1 million. The company does not anticipate a material tax liability associated with this transaction. In connection with the restructuring transaction we entered into various related agreements with Novo Nordisk and Novo Nordisk Delivery Technologies effective January 26, 2005, including the following:
  •  an amended and restated license agreement amending the Development and License Agreement previously in place with Novo Nordisk, expanding Novo Nordisk’s development and manufacturing rights to the AERx iDMS program and providing for royalties to the Company on future AERx iDMS net sales in lieu of a percentage interest in the gross profits from the commercialization of AERx iDMS;
 
  •  a three-year agreement under which Novo Nordisk Delivery Technologies will perform contract manufacturing for the Company of AERx iDMS-identical devices and dosage forms filled with compounds provided by the Company in support of preclinical and initial clinical development by the Company of other AERx products; and
 
  •  an amendment of the stock purchase agreement in place between the Company and Novo Nordisk prior to the closing of the restructuring transaction, deleting the provisions whereby the Company can require Novo Nordisk to purchase certain amounts of common stock, imposing certain restrictions on the ability of Novo Nordisk to sell shares of the Company’s common stock previously purchased by Novo Nordisk, and providing Novo Nordisk with certain registration and information rights with respect to these shares.
      At the closing of the restructuring transaction, the Company received $50.6 million in cash, applied $4.0 million of deposits from Novo Nordisk and recorded $731,000 as payment for inventory, prepaid, and other assets from Novo Nordisk Delivery Technologies in consideration for $54.5 million of fixed assets at net book value, $515,000 of inventory and $317,000 for prepaid and other assets.
      As a result of this transaction the Company was no longer obligated to continue work related to the non-refundable milestone payment from Novo Nordisk related to the commercialization of AERx and recognized the remaining balance of the deferred revenue associated with the milestone of $5.2 million as revenue in the

60


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
first quarter of 2005. Additionally, Aradigm was released from its contractual obligation relating to future operating leases payments for the two buildings assigned to Novo Nordisk Delivery Technologies and accordingly reversed the deferred rent expense related to the two buildings of $1.4 million. At December 31, 2004 the Company’s future lease commitments totaled $53.4 million. After the closing of the restructuring transaction with Novo Nordisk, the Company’s future lease commitments total $26.2 million.
      As a result of the restructuring transaction, our contract revenue from the Company’s development agreement with Novo Nordisk will cease in 2005. The Company will record project development revenue from Novo Nordisk A/ S for the first 26 days of 2005 of approximately $2.1 million. Subsequently, in 2005 we will record revenue of approximately $800,000 from Novo Nordisk Development Technologies related to transition and support agreements entered into in connection with the restructuring transaction.
      In addition, Novo Nordisk delivery Technologies hired 126 Aradigm employees at the closing of the restructuring transaction.
      Subsequent to completion in January 2005 of the restructuring transaction between the Company and Novo Nordisk, the Company has commitments under two leases. The first lease is for a building containing office, laboratory and manufacturing facilities, and expires in 2016. A minor portion of this lease expense is offset by a sublease to Novo Nordisk Delivery Technologies of $10,000 per month for 14 months commencing January 2005. The second lease is for a warehouse and expires in December 2005. Future minimum lease payments non-cancelable at December 31, 2004 under these two lease agreements are as follows (amounts in thousands):
         
    Operating
    Leases
     
Years ending December 31:
       
2005
  $ 2,645  
2006
    1,764  
2007
    2,321  
2008
    2,388  
2009
    2,337  
2010 and thereafter
    14,705  
       
Total minimum lease payments
  $ 26,160  
       

61


Table of Contents

ARADIGM CORPORATION
NOTES TO FINANCIAL STATEMENTS — (Continued)
12. Quarterly Results of Operations (Unaudited)
      Following is a summary of the quarterly results of operations for the years ended December 31, 2004 and 2003 (amounts in thousands):
                                     
    March 31,   June 30,   September 30,   December 31,
    2004   2004   2004   2004
                 
Contract and license revenues
  $ 6,643     $ 7,078     $ 6,352     $ 7,972  
                         
Operating expenses:
                               
 
Research and development
    11,887       11,412       11,407       11,771  
 
General and administrative
    2,536       3,167       3,217       3,014  
                         
   
Total expenses
    14,423       14,579       14,624       14,785  
                         
Loss from operations
    (7,780 )     (7,501 )     (8,272 )     (6,813 )
Interest income
    66       49       45       34  
Other income and expense
    (10 )     (5 )     (3 )     1  
                         
Net loss
    (7,724 )     (7,457 )     (8,230 )     (6,778 )
                         
Basic and diluted loss per share applicable to common shareholders:
                               
 
Net loss
  $ (0.12 )   $ (0.12 )   $ (0.13 )   $ (0.10 )
                         
 
Shares used in computing basic and diluted loss per share applicable to common shareholders
    62,942       63,531       63,564       64,773  
                         
                                   
    March 31,   June 30,   September 30,   December 31,
    2003   2003   2003   2003
                 
Contract and license revenues
  $ 7,690     $ 9,378     $ 9,843     $ 6,946  
                         
Operating expenses:
                               
 
Research and development
    12,999       14,001       11,988       10,648  
 
General and administrative
    2,669       2,844       2,428       2,450  
                         
 
Total expenses
    15,668       16,845       14,416       13,098  
                         
Loss from operations
    (7,978 )     (7,467 )     (4,573 )     (6,152 )
Interest income
    108       86       68       76  
Interest expense
    (56 )     (39 )     (27 )     (16 )
                         
Net loss
  $ (7,926 )   $ (7,420 )   $ (4,532 )   $ (6,092 )
                         
Basic and diluted loss per share applicable to common shareholders:
                               
 
Net loss
  $ (0.22 )   $ (0.15 )   $ (0.08 )   $ (0.10 )
                         
 
Shares used in computing basic and diluted loss per share applicable to common shareholders
    35,601       51,144       54,263       59,421  
                         

62


Table of Contents

Item 9. Changes in and Disagreements with Accountants on Accounting and Financial Disclosure
      None.
Item 9A. Controls and Procedures
      Evaluation of disclosure controls and procedures: Based on their evaluation of our disclosure controls and procedures (as defined in the rules promulgated under the Securities Exchange Act of 1934, as amended, our chief executive officer and our chief financial officer concluded that our disclosure controls and procedures were effective as of the end of the period covered by this report.
      We believe that a controls system, no matter how well designed and operated, cannot provide absolute assurance that the objectives of the controls system are met, and no evaluation of controls can provide absolute assurance that all control issues and instances of fraud, if any, within a company have been detected. Our disclosure controls and procedures are designed to provide reasonable assurance of achieving their objectives, and our chief executive officer and our chief financial officer have concluded that these controls and procedures are effective at the “reasonable assurance” level.
      Changes in internal controls: There were no significant changes in our internal controls over financial reporting during the period covered by this report that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.
Item 9B. Other Information
      None

63


Table of Contents

PART III
Item 10. Directors and Executive Officers of the Registrant
Identification of Directors; Audit Committee Information; Code of Ethics
      The information required by this Item concerning (i) the Company’s directors, (ii) the identification of the members of the Company’s audit committee, (iii) the identification of the Audit Committee Financial Expert and (iv) the Company’s Code of Ethics is incorporated by reference from the section captioned “Proposal 1: Election of Directors” contained in the Company’s Definitive Proxy Statement related to the Annual Meeting of Shareholders to be held May 19, 2005, to be filed by the Company with the Securities and Exchange Commission (the “Proxy Statement”).
Identification of Executive Officers
      The information required by this Item concerning our executive officers is set forth in Part I of this Report.
Section 16(a) Compliance
      The information regarding compliance with Section 16(a) of the Securities Exchange Act of 1934, as amended, required by this Item is incorporated by reference from the section captioned “Section 16(a) Beneficial Ownership Reporting Compliance” in the Proxy Statement.
Item 11. Executive Compensation
      The information required by this Item is incorporated by reference from the sections captioned “Compensation of Executive Officers,” “Compensation of Directors,” “Compensation Committee Interlocks and Insider Participation,” the Report of the Compensation Committee and the Proxy Graph contained in the Proxy Statement.
Item 12. Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters
      The information required by this Item is incorporated by reference from the section captioned “Security Ownership of Certain Beneficial Owners and Management” and “Equity Compensation Plan Information” contained in the Proxy Statement.
Item 13. Certain Relationships and Related Transactions
      The information required by this Item is incorporated by reference from the sections captioned “Certain Transactions” and “Compensation of Executive Officers” contained in the Proxy Statement.
Item 14. Principal Accountant Fees and Services
      The information required by this item is incorporated by reference from the section captioned “Proposal 3: Ratification of Selection of Independent Auditors” in the Proxy Statement.

64


Table of Contents

PART IV
Item 15. Exhibits, Financial Statements Schedules, and Reports on Form 8-K
      (a)(1) Financial Statements.
      Included in Part II of this Report:
         
    Page in
    Form 10-K
     
Report of Independent Registered Public Accounting Firm
    39  
Balance Sheets — December 31, 2004 and 2003
    40  
Statements of Operations — Years ended December 31, 2004, 2003 and 2002
    41  
Statements of Redeemable Convertible Preferred Stock and Shareholders’ Equity — Years ended December 31, 2004, 2003 and 2002
    42  
Statements of Cash Flows — Years ended December 31, 2004, 2003 and 2002
    44  
Notes to Financial Statements
    45  
      (2) Financial Statement Schedules.
      All schedules have been omitted because they are not required.
      (3) Exhibits.
         
Exhibit No.   Description
     
  3 .1(1)   Amended and Restated Articles of Incorporation of the Company.
  3 .2(4)   Bylaws of the Company, as amended.
  3 .3(10)   Certificate of Determination of Series A Junior Participating Preferred Stock.
  3 .4(9)   Certificate of Determination and Preferences of Series A Convertible Preferred Stock.
  3 .5(10)   Certificate of Amendment of Amended and Restated Articles of Incorporation of the Company.
  3 .6(10)   Certificate of Amendment of Certificate of Determination of Series A Junior Participating Preferred Stock.
  3 .7(15)   Certificate of Amendment of Amended and Restated Articles of Incorporation of the Company.
  3 .8(15)   Certificate of Amendment of Certificate of Determination of Series A Junior Participating Preferred Stock.
  4 .1   Reference is made to Exhibits 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7 and 3.8.
  4 .2(1)   Specimen common stock certificate.
  10 .1(1)+   Form of Indemnity Agreement between the Registrant and each of its directors and officers.
  10 .2(14)+   Equity Incentive Plan, as amended.
  10 .3(1)+   Form of the Company’s Incentive Stock Option Agreement under the Equity Incentive Plan.
  10 .4(1)+   Form of the Company’s Non-statutory Stock Option Agreement under the Equity Incentive Plan.
  10 .5(1)+   Form of the Company’s Non-Employee Directors’ Stock Option Plan.
  10 .6(1)+   Form of the Company’s Non-statutory Stock Option Agreement under the Non-Employee Directors’ Stock Option Plan.
  10 .7(14)+   Employee Stock Purchase Plan, as amended.
  10 .8(1)+   Form of the Company’s Employee Stock Purchase Plan Offering Document.
  10 .9(1)   Master Lease Agreement and Warrant, between the Company and Comdisco, Inc., dated June 9, 1995.
  10 .10(2)*   Product Development and Commercialization Agreement between the Company and SmithKline Beecham PLC.

65


Table of Contents

         
Exhibit No.   Description
     
  10 .11(3)   Lease Agreement for the property located at 3911 Trust Way, Hayward, California, dated March 17, 1997, between the Company and Hayward Point Eden I Limited Partnership.
  10 .11a(3)   First Amendment to Lease dated December 22, 1997, between the Company and Hayward Point Eden I Limited Partnership.
  10 .11b(3)   Second Amendment to Lease, dated January 28, 1998, between the Company and Hayward Point Eden I Limited Partnership.
  10 .12(3)   Lease Agreement for the property located in Phase V of the Britannia Point Eden Business Park in Hayward, California, dated January 28, 1998, between the Company and Britannia Point Eden, LLC.
  10 .13(5)   Rights Agreement, dated as of August 31, 1998, between the Company and Bank Boston, N.A.
  10 .13a(10)   Amendment to Rights Agreement, dated as of October 22, 2001, by and between the Company and Fleet National Bank.
  10 .13b(10)   Amendment to Rights Agreement, dated as of December 6, 2001, by and between the Company and EquiServe Trust Company.
  10 .14(6)   Lease Agreement for the property located at 2704 West Winton Avenue, Hayward, California, dated September 11, 2000, between the Company and Winton Industrial Center, Inc.
  10 .14a(8)   Amendment No. 1 to Standard Office/ Warehouse Lease, dated March 1, 2001, by and between the Company and Winton Industrial Center, Inc.
  10 .15(6)   Lease Agreement for the property located at 3930 Point Eden Way, Hayward, California, dated July 1, 2000, between the Company and Hayward Point Eden I Limited Partnership.
  10 .16(7)*   Amendment to GlaxoSmithKline agreement executed in December 2000.
  10 .17(11)   Securities Purchase Agreement, dated as of February 10, 2003, by and among the Company and the purchasers named therein.
  10 .18(11)   Warrant Repricing Agreement, dated as of February 10, 2003, by and between the Company and the persons listed on Exhibit A thereto.
  10 .19(12)   Securities Purchase Agreement, dated as of November 7, 2003, by and among the Company and the purchasers named therein.
  10 .20(13)   Securities Purchase Agreement, dated as of November 14, 2003, by and among the Company and the purchasers named therein.
  10 .21(16)   Restructuring Agreement, dated as of September 28, 2004, by and among the Company, Novo Nordisk A/S and Novo Nordisk Delivery Technologies, Inc.
  10 .22(17)   Securities Purchase Agreement, dated as of December 17, 2004, by and among the Company and the purchasers named therein.
  23 .1   Consent of Independent Registered Public Accounting Firm.
  24 .1   Power of Attorney. Reference is made to the signature page.
  31 .1   Section 302 Certification of the Chief Executive Officer.
  31 .2   Section 302 Certification of the Chief Financial Officer.
  32 .1   Section 906 Certification of the Chief Executive Officer and the Chief Financial Officer.
 
  * The Company has sought confidential treatment for portions of the referenced exhibit.
  + Represents a management contract or compensatory plan or arrangement.
  (1)  Incorporated by reference to the Company’s Form S-1 (No. 333-4236), as amended.
 
  (2)  Incorporated by reference to the Company’s Form 8-K filed on November 7, 1997.
 
  (3)  Incorporated by reference to the Company’s Form 10-K filed on March 24, 1998, as amended.
 
  (4)  Incorporated by reference to the Company’s Form 10-Q filed on August 14, 1998.
 
  (5)  Incorporated by reference to the Company’s 8-K filed on September 2, 1998.
 
  (6)  Incorporated by reference to the Company’s Form 10-Q filed on November 13, 2000.

66


Table of Contents

  (7)  Incorporated by reference to the Company’s Form 10-K filed for the year ended December 31, 2000.
 
  (8)  Incorporated by reference to the Company’s Form 10-Q filed on August 13, 2001.
 
  (9)  Incorporated by reference to the Company’s Form S-3 (No. 333-76584).
(10)  Incorporated by reference to the Company’s Form 10-K filed for the year ended December 31, 2001.
 
(11)  Incorporated by reference to the Company’s Form 10-Q filed on May 13, 2003.
 
(12)  Incorporated by reference to the Company’s Form 8-K filed on November 12, 2003.
 
(13)  Incorporated by reference to the Company’s Form 8-K filed on November 20, 2003.
 
(14)  Incorporated by reference to the Company’s definitive proxy statement filed on April 2, 2004
 
(15)  Incorporated by reference to the Company’s Form 10-Q filed on August 13, 2004.
 
(16)  Incorporated by reference to the Company’s Form 10-Q filed on November 15, 2004
 
(17)  Incorporated by reference to the Company’s Form 8-K filed on December 23, 2004.
      (c) Index to Exhibits.
      See Exhibits listed under Item 15(a)(3).
      (d) Financial Statement Schedules.
      All schedules have been omitted because they are not required.

67


Table of Contents

SIGNATURES
      Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the Registrant has duly caused this Report to be signed on its behalf by the undersigned, thereunto duly authorized, in the City of Hayward, State of California, on the 30th day of March 2005.
  ARADIGM CORPORATION
  By:  /s/ V. Bryan Lawlis
 
 
  V. Bryan Lawlis
  President and Chief Executive Officer
      KNOWN ALL PERSONS BY THESE PRESENTS, that each person whose signature appears below constitutes and appoints, jointly and severally, V. Bryan Lawlis and Thomas C. Chesterman, and each one of them, attorneys-in-fact for the undersigned, each with power of substitution, for the undersigned in any and all capacities, to sign any and all amendments to this Report on Form 10-K, and to file the same, with exhibits thereto and other documents in connection therewith, with the Securities and Exchange Commission, hereby ratifying and confirming all that each of said attorneys-in-fact, or their substitutes, may do or cause to be done by virtue hereof.
      IN WITNESS WHEREOF, each of the undersigned has executed this Power of Attorney as of the date indicated opposite his name.
      Pursuant to the requirements of the Securities and Exchange Act of 1934, this Report has been signed below by the following persons on behalf of the Registrant and in the capacities and on the dates indicated.
             
Signature   Title   Date
         
/s/ V. Bryan Lawlis
 
V. Bryan Lawlis
  President, Chief Executive Officer, and Director (Principal Executive Officer)   March 30, 2005
 
/s/ Thomas C. Chesterman
 
Thomas C. Chesterman
  Sr. VP and Chief Financial Officer(Principal Financial and Accounting Officer)   March 30, 2005
 
/s/ Virgil D. Thompson
 
Virgil D. Thompson
  Chairman of the Board and Director   March 30, 2005
 
/s/ Frank H. Barker
 
Frank H. Barker
  Director   March 30, 2005
 
/s/ Stan Benson
 
Stan Benson
  Director   March 30, 2005
 
/s/ Igor Gonda
 
Igor Gonda
  Director   March 30, 2005
 
/s/ Stephen O. Jaeger
 
Stephen O. Jaeger
  Director   March 30, 2005

68


Table of Contents

             
Signature   Title   Date
         
 
/s/ John M. Nehra
 
John M. Nehra
  Director   March 30, 2005
 
/s/ Wayne L. Roe
 
Wayne L. Roe
  Director   March 30, 2005
 
/s/ Richard P. Thompson
 
Richard P. Thompson
  Director   March 30, 2005

69


Table of Contents

EXHIBIT INDEX
         
Exhibit No.   Description
     
  3 .1(1)   Amended and Restated Articles of Incorporation of the Company.
  3 .2(4)   Bylaws of the Company, as amended.
  3 .3(10)   Certificate of Determination of Series A Junior Participating Preferred Stock.
  3 .4(9)   Certificate of Determination and Preferences of Series A Convertible Preferred Stock.
  3 .5(10)   Certificate of Amendment of Amended and Restated Articles of Incorporation of the Company.
  3 .6(10)   Certificate of Amendment of Certificate of Determination of Series A Junior Participating Preferred Stock.
  3 .7(15)   Certificate of Amendment of Amended and Restated Articles of Incorporation of the Company.
  3 .8(15)   Certificate of Amendment of Certificate of Determination of Series A Junior Participating Preferred Stock.
  4 .1   Reference is made to Exhibits 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7 and 3.8.
  4 .2(1)   Specimen common stock certificate.
  10 .1(1)+   Form of Indemnity Agreement between the Registrant and each of its directors and officers.
  10 .2(14)+   Equity Incentive Plan, as amended.
  10 .3(1)+   Form of the Company’s Incentive Stock Option Agreement under the Equity Incentive Plan.
  10 .4(1)+   Form of the Company’s Non-statutory Stock Option Agreement under the Equity Incentive Plan.
  10 .5(1)+   Form of the Company’s Non-Employee Directors’ Stock Option Plan.
  10 .6(1)+   Form of the Company’s Non-statutory Stock Option Agreement under the Non-Employee Directors’ Stock Option Plan.
  10 .7(14)+   Employee Stock Purchase Plan, as amended.
  10 .8(1)+   Form of the Company’s Employee Stock Purchase Plan Offering Document.
  10 .9(1)   Master Lease Agreement and Warrant, between the Company and Comdisco, Inc., dated June 9, 1995.
  10 .10(2)*   Product Development and Commercialization Agreement between the Company and SmithKline Beecham PLC.
  10 .11(3)   Lease Agreement for the property located at 3911 Trust Way, Hayward, California, dated March 17, 1997, between the Company and Hayward Point Eden I Limited Partnership.
  10 .11a(3)   First Amendment to Lease dated December 22, 1997, between the Company and Hayward Point Eden I Limited Partnership.
  10 .11b(3)   Second Amendment to Lease, dated January 28, 1998, between the Company and Hayward Point Eden I Limited Partnership.
  10 .12(3)   Lease Agreement for the property located in Phase V of the Britannia Point Eden Business Park in Hayward, California, dated January 28, 1998, between the Company and Britannia Point Eden, LLC.
  10 .13(5)   Rights Agreement, dated as of August 31, 1998, between the Company and Bank Boston, N.A.
  10 .13a(10)   Amendment to Rights Agreement, dated as of October 22, 2001, by and between the Company and Fleet National Bank.
  10 .13b(10)   Amendment to Rights Agreement, dated as of December 6, 2001, by and between the Company and EquiServe Trust Company.
  10 .14(6)   Lease Agreement for the property located at 2704 West Winton Avenue, Hayward, California, dated September 11, 2000, between the Company and Winton Industrial Center, Inc.
  10 .14a(8)   Amendment No. 1 to Standard Office/ Warehouse Lease, dated March 1, 2001, by and between the Company and Winton Industrial Center, Inc.
  10 .15(6)   Lease Agreement for the property located at 3930 Point Eden Way, Hayward, California, dated July 1, 2000, between the Company and Hayward Point Eden I Limited Partnership.
  10 .16(7)*   Amendment to GlaxoSmithKline agreement executed in December 2000.


Table of Contents

         
Exhibit No.   Description
     
  10 .17(11)   Securities Purchase Agreement, dated as of February 10, 2003, by and among the Company and the purchasers named therein.
  10 .18(11)   Warrant Repricing Agreement, dated as of February 10, 2003, by and between the Company and the persons listed on Exhibit A thereto.
  10 .19(12)   Securities Purchase Agreement, dated as of November 7, 2003, by and among the Company and the purchasers named therein.
  10 .20(13)   Securities Purchase Agreement, dated as of November 14, 2003, by and among the Company and the purchasers named therein.
  10 .21(16)   Restructuring Agreement, dated as of September 18, 2004, by and among the Company, Novo Nordisk A/ S and Novo Nordisk Delivery Technologies, Inc.
  10 .22(17)   Securities Purchase Agreement, dated as of December 17, 2004, by and among the Company and the purchasers named therein.
  23 .1   Consent of Independent Registered Public Accounting Firm.
  24 .1   Power of Attorney. Reference is made to the signature page.
  31 .1   Section 302 Certification of the Chief Executive Officer.
  31 .2   Section 302 Certification of the Chief Financial Officer.
  32 .1   Section 906 Certification of the Chief Executive Officer and the Chief Financial Officer.
 
  * The Company has sought confidential treatment for portions of the referenced exhibit.
  + Represents a management contract or compensatory plan or arrangement.
  (1)  Incorporated by reference to the Company’s Form S-1 (No. 333-4236), as amended.
 
  (2)  Incorporated by reference to the Company’s Form 8-K filed on November 7, 1997.
 
  (3)  Incorporated by reference to the Company’s Form 10-K filed on March 24, 1998, as amended.
 
  (4)  Incorporated by reference to the Company’s Form 10-Q filed on August 14, 1998.
 
  (5)  Incorporated by reference to the Company’s 8-K filed on September 2, 1998.
 
  (6)  Incorporated by reference to the Company’s Form 10-Q filed on November 13, 2000.
 
  (7)  Incorporated by reference to the Company’s Form 10-K filed for the year ended December 31, 2000.
 
  (8)  Incorporated by reference to the Company’s Form 10-Q filed on August 13, 2001.
 
  (9)  Incorporated by reference to the Company’s Form S-3 (No. 333-76584).
(10)  Incorporated by reference to the Company’s Form 10-K filed for the year ended December 31, 2001.
 
(11)  Incorporated by reference to the Company’s Form 10-Q filed on May 13, 2003.
 
(12)  Incorporated by reference to the Company’s Form 8-K filed on November 12, 2003.
 
(13)  Incorporated by reference to the Company’s Form 8-K filed on November 20, 2003.
 
(14)  Incorporated by reference to the Company’s definitive proxy statement filed on April 2, 2004
 
(15)  Incorporated by reference to the Company’s Form 10-Q filed on August 13, 2004.
 
(16)  Incorporated by reference to the Company’s Form 10-Q filed on November 15, 2004
 
(17)  Incorporated by reference to the Company’s Form 8-K filed on December 23, 2004.